CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g05060

Gene name SAR DNA-binding protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.70 83.5 At3g05060 819668 SAR DNA-binding protein, putative SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein S.X. H.G.
0.81 90.4 At4g25340 828637 immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:nucleolus;MOBFPVA S.X. H.G.
0.72 84.8 At3g12270 820407 PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3) F:methyltransferase activity, zinc ion binding;P:metabolic process;C:intracellular;MBOFPA S.X. H.G.
0.67 81.6 At1g56110 842063 NOP56 (Arabidopsis homolog of nucleolar protein Nop56) NOP56-like protein S.X. H.G.
0.66 80.1 At3g11964 820370 RNA binding F:RNA binding;P:mRNA processing, RNA processing;C:nucleolus, plasma membrane;BOMFPA S.X. H.G.
0.66 80.1 At4g32720 829408 AtLa1 (Arabidopsis thaliana La protein 1) Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis. S.X. H.G.
0.63 78.1 At5g38720 833863 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA S.X. H.G.
0.61 76.7 At5g14050 831254 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;BMOFPAV S.X. H.G.
0.60 75.7 At5g62440 836365 - Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. S.X. H.G.
0.60 75.7 At1g03360 839521 ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4) F:RNA binding, exonuclease activity;P:unknown;C:mitochondrion;OMAFP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
38.0 99.8 GSM133976 Birnbaum_1-6_StageI-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
28.2 99.7 GSM252684 Arabidopsis Root from tip to 130 mm proximal to tip (cut 8dpg) rep1 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
27.3 99.7 GSM252688 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (8 dpg) rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
25.4 99.6 GSM252685 Arabidopsis Root from tip to 130 mm proximal to tip (cut 8dpg) rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
22.9 99.6 GSM184840 Arabidopsis, root, longitudinal zone 1, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
22.4 99.6 GSM311274 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
22.4 99.6 E-MEXP-849-raw-cel-1181981046
22.0 99.6 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
21.9 99.6 GSM133977 Birnbaum_1-7_StageI-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
21.7 99.6 GSM252686 Arabidopsis Root from tip to 130 mm proximal to tip (cut 8dpg) rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.65 0 981 At5g27120 832770 SAR DNA-binding protein, putative SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; has similarity to MAR binding NOP58 protein C.G. S.X.
0.57 2e-63 244 At5g27140 832772 SAR DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:membrane;MOFAPBV C.G. S.X.
0.01 5e-2 40 At2g29930 817543 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 2e-1 38 At4g10510 826643 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:unknown;BPOAFM C.G. S.X.
0.01 2e-1 38 At4g10550 826647 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM C.G. S.X.
0.01 2e-1 38 At3g28345 822463 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 9e-17 89 Glycine max GmaAffx.67609.1.S1_at BG551013 - - 3e-17 At3g05060 SAR DNA-binding protein, putative C.G. S.X.
0.26 6e-34 145 Hordeum vulgare Contig3819_at Contig3819 - - 5e-40 At5g27120 SAR DNA-binding protein, putative C.G. S.X.
0.30 1e-19 99 Oryza sativa Os03g0350100 AK099754.1 - SAR DNA-binding protein-2 1e-22 At3g05060 SAR DNA-binding protein, putative C.G. S.X.
0.22 2e-20 101 Populus trichocarpa PtpAffx.137461.1.S1_at CX171679 hypothetical protein - 5e-22 At5g27120 SAR DNA-binding protein, putative C.G. S.X.
0.26 3e-19 97 Triticum aestivum Ta.721.1.S1_x_at BJ263274 - - 1e-37 At5g27120 SAR DNA-binding protein, putative C.G. S.X.
0.10 2e-20 99 Vitis vinifera 1616265_s_at CF208531 - - 4e-20 At3g05060 SAR DNA-binding protein, putative C.G. S.X.
0.25 2e-21 103 Zea mays Zm.10383.1.A1_at AI833554 - - 6e-21 At3g05060 SAR DNA-binding protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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