Gene omics information

Query gene ID At3g04770
Gene name RPSAb (40S ribosomal protein SA B)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5368.6At3g04770819637RPSAb (40S ribosomal protein SA B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane;BMOAFPS.X.H.G.
0.7184.2At3g57940824963unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFAPVS.X.H.G.
0.6277.3At4g05410825889transducin family protein / WD-40 repeat family proteinF:nucleotide binding, nucleic acid binding;P:mitochondrial fission;C:nucleolus, small nucleolar ribonucleoprotein complex, anaphase-promoting complex, CUL4 RING ubiquitin ligase complex;MFOBPVAS.X.H.G.
0.6075.7At1g69070843239-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPVAS.X.H.G.
0.5773.8At1g63810842684-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPAS.X.H.G.
0.5673.0At3g09720820129DEAD/DEAH box helicase, putativeF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.5570.6At3g57660824935NRPA1Encodes a subunit of RNA polymerase I (aka RNA polymerase A).S.X.H.G.
0.5469.5At5g11240830994transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:endomembrane system;BMFOPAS.X.H.G.
0.5368.6At3g15460820785brix domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPS.X.H.G.
0.5267.4At5g06550830543-F:molecular_function unknown;P:cell surface receptor linked signal transduction;C:unknown;MBOFPS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
32.999.7GSM142734DH001_ATH1_A1-UNM1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
29.199.7GSM134202Murray_3-1_D1-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
28.799.7GSM173623Col-0 rep2GSE7227microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
26.099.7GSM133951Murray_2-7_T12-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
25.599.7GSM133952Murray_2-8_T14-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
24.099.6GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibition
23.999.6GSM142735DH001_ATH1_A2-BCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
23.199.6GSM133953Murray_2-9_T16-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
21.099.6GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibition
20.099.6GSM173629ARF10 rep3GSE7227microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.554e-125448At1g72370843569P40acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.C.G.S.X.
0.031e-138At3g32090822964transcription factor-relatedF:transcription factor activity, sequence-specific DNA binding;P:regulation of transcription;C:nucleus;PC.G.S.X.
0.021e-138At2g29840817534protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVC.G.S.X.
0.012e+034At5g607608361972-phosphoglycerate kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAFVC.G.S.X.
0.012e+034At5g22320832292leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVAC.G.S.X.
0.012e+034At5g36880833655acetyl-CoA synthetase, putative / acetate-CoA ligase, putativeF:acetate-CoA ligase activity, catalytic activity, AMP binding;P:metabolic process;C:cytosol, chloroplast stroma, chloroplast;BOMFPAVC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.421e-54214Glycine maxGmaAffx.92132.1.S1_s_atCF807857--6e-55At3g04770RPSAb (40S ribosomal protein SA B)C.G.S.X.
0.292e-42173Hordeum vulgareContig1919_atContig1919--2e-78At1g72370P40C.G.S.X.
0.383e-56220Oryza sativaOs07g0616600AK102735.1-40S ribosomal protein SA (p40) (Laminin receptorhomolog)4e-64At3g04770RPSAb (40S ribosomal protein SA B)C.G.S.X.
0.442e-62240Populus trichocarpaPtp.5310.1.S1_s_atCF118960hypothetical protein-4e-63At3g04770RPSAb (40S ribosomal protein SA B)C.G.S.X.
0.349e-49194Triticum aestivumTa.24129.1.S1_atCK209220--4e-55At3g04770RPSAb (40S ribosomal protein SA B)C.G.S.X.
0.341e-63242Vitis vinifera1621771_atCB34852240S ribosomal protein SA-1e-110At1g72370P40C.G.S.X.
0.301e-21103Zea maysZm.16537.3.S1_a_atCA404068hypothetical protein LOC100273170-2e-22At3g04770RPSAb (40S ribosomal protein SA B)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
CGO:0006412The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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