CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g04720

Gene name PR4 (PATHOGENESIS-RELATED 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.14 6.8 At3g04720 819632 PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. S.X. H.G.
0.03 0.6 At1g70810 843418 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO S.X. H.G.
0.03 0.6 At3g56200 824786 amino acid transporter family protein Encodes a putative amino acid transporter. S.X. H.G.
0.03 0.6 At3g14620 820690 CYP72A8 putative cytochrome P450 S.X. H.G.
0.02 0.4 At4g27300 828838 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
43.0 99.8 GSM39200 Col_C2 GSE2169 rre1 and rre2 mutants
41.6 99.8 GSM39214 RRE2_Chitin4 GSE2169 rre1 and rre2 mutants
41.2 99.8 GSM39209 RRE2_C3 GSE2169 rre1 and rre2 mutants
38.9 99.8 GSM39210 RRE2_C4 GSE2169 rre1 and rre2 mutants
37.6 99.7 GSM39211 RRE2_Chitin1 GSE2169 rre1 and rre2 mutants
36.7 99.7 GSM39201 Col_C3 GSE2169 rre1 and rre2 mutants
35.6 99.7 GSM39191 RRE1_C1 GSE2169 rre1 and rre2 mutants
35.4 99.7 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
35.3 99.7 GSM39202 Col_C4 GSE2169 rre1 and rre2 mutants
35.0 99.7 GSM39208 RRE2_C2 GSE2169 rre1 and rre2 mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 8e-5 48 At2g43590 818961 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV C.G. S.X.
0.02 8e-2 38 At1g51660 841591 ATMKK4 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4) Encodes a mitogen-activated map kinase kinase (there are nine in Arabidopsis) involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK5. In plants with both MKK5 and MKK6 levels reduced by RNAi plants, floral organs do not abscise suggestion a role for both proteins in mediating floral organ abscission. C.G. S.X.
0.02 3e-1 36 At2g25160 817054 CYP82F1 member of CYP82F C.G. S.X.
0.01 1e+0 34 At5g43230 834341 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOB C.G. S.X.
0.01 5e+0 32 At5g45540 834590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 2e-15 83 Glycine max GmaAffx.92499.1.S1_s_at CF809203 Win gene encoding wound-induced protein - 2e-15 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.11 3e-6 52 Hordeum vulgare Contig6576_at Contig6576 - - 6e-6 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.11 1e-8 61 Oryza sativa Os11g0591800 9639.m03440 - Wound-induced protein WIN2 precursor 4e-9 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.14 3e-2 40 Populus trichocarpa Ptp.2463.1.S1_a_at CV257616 hypothetical protein - 3e-2 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.13 2e-8 59 Triticum aestivum TaAffx.116570.1.S1_x_at AL825027 - - 2e-8 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.10 3e-14 77 Vitis vinifera 1620518_at CF201341.1 - - 9e-14 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.09 3e-2 38 Zea mays Zm.1506.1.A1_at X82184.1 defence-related protein - 1e-1 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0080027 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a herbivore.
X GO:0009651 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
X GO:0009627 The salicylic acid mediated response to a pathogen which confers broad spectrum resistance.
X GO:0009615 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus.
X GO:0009723 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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