CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g04670

Gene name WRKY39

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.97 97.6 At3g04670 819625 WRKY39 member of WRKY Transcription Factor; Group II-d S.X. H.G.
0.46 59.8 At5g66950 836829 catalytic/ pyridoxal phosphate binding F:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:plasma membrane;PMFOBA S.X. H.G.
0.40 50.8 At3g28690 822499 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.38 46.7 At1g71010 843440 phosphatidylinositol-4-phosphate 5-kinase family protein F:1-phosphatidylinositol-4-phosphate 5-kinase activity, protein binding, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process, cellular protein metabolic process;C:cellular_component unknown;MOFPAB S.X. H.G.
0.35 41.6 At1g34370 840339 STOP1 (sensitive to proton rhizotoxicity 1) Encodes a putative nuclear Cys(2)His(2)-type zinc finger protein involved in H+ and Al3+ rhizotoxicity. In mutants exposed to aluminum stress, there is no induction of AtALMT1, an malate transporter known to be involved in the mediation of aluminum toxicity. S.X. H.G.
0.34 39.8 At1g52420 841673 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:unknown;BOAPFM S.X. H.G.
0.33 38.1 At4g24400 828542 CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) Encodes a CBL (calcineurin B-like calcium sensor proteins) -interacting serine/threonine protein kinase. S.X. H.G.
0.33 38.1 At5g12200 831093 dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2) F:hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, dihydropyrimidinase activity;P:unknown;C:endomembrane system;OBMAFP S.X. H.G.
0.33 38.1 At4g24520 828554 ATR1 (ARABIDOPSIS P450 REDUCTASE 1) Encodes a cyp450 reductase likely to be involved in phenylpropanoid metabolism. S.X. H.G.
0.32 35.7 At3g12950 820480 catalytic F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;PBOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
44.9 99.8 GSM133960 Fukuda_1-5_4A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
38.8 99.8 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
38.5 99.8 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
37.5 99.7 GSM133958 Fukuda_1-3_2A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
34.2 99.7 GSM133959 Fukuda_1-4_2B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
33.0 99.7 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
30.8 99.7 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
26.6 99.7 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
26.4 99.7 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
24.0 99.6 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.53 8e-80 297 At5g28650 832971 WRKY74 member of WRKY Transcription Factor; Group II-d C.G. S.X.
0.11 1e-10 67 At4g24240 828525 WRKY7 Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family. C.G. S.X.
0.11 9e-9 61 At2g30590 817609 WRKY21 Encodes WRKY DNA-binding protein 21 (WRKY21). C.G. S.X.
0.06 1e-7 57 At2g24570 816993 WRKY17 member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. C.G. S.X.
0.06 2e-6 54 At4g31550 829282 WRKY11 member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. C.G. S.X.
0.08 8e-3 42 At2g23320 816864 WRKY15 Encodes WRKY DNA-binding protein 15 (WRKY15). C.G. S.X.
0.02 1e-1 38 At4g33350 829471 chloroplast inner membrane import protein Tic22, putative F:unknown;P:unknown;C:mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope;BPO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 7e-4 46 Glycine max Gma.14035.1.A1_at CD414105 WRKY14 protein - 9e-23 At2g23320 WRKY15 C.G. S.X.
0.12 4e-6 52 Hordeum vulgare Contig22226_at Contig22226 - - 6e-6 At3g04670 WRKY39 C.G. S.X.
0.11 1e-24 115 Oryza sativa Os.27274.1.S1_at - - - 0 C.G. S.X.
0.24 7e-35 149 Populus trichocarpa PtpAffx.61240.1.A1_at DN487796 hypothetical protein - 6e-40 At5g28650 WRKY74 C.G. S.X.
0.09 2e-3 44 Triticum aestivum Ta.14320.1.A1_at BU100245 WRKY16 transcription factor - 4e-8 At5g28650 WRKY74 C.G. S.X.
0.12 6e-7 54 Vitis vinifera 1612649_s_at CA809370 hypothetical protein LOC100244122 - 1e-6 At3g04670 WRKY39 C.G. S.X.
0.14 2e-26 119 Zea mays Zm.9098.1.A1_a_at BM336161 Hypothetical protein LOC100192894 - 6e-6 At4g31550 WRKY11 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
L GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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