Gene omics information

Query gene ID At3g04640
Gene name glycine-rich protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8592.4At3g04640819622glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVAS.X.H.G.
0.7083.5At2g33580817923protein kinase family protein / peptidoglycan-binding LysM domain-containing proteinF:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:plasma membrane;MPOBFVAS.X.H.G.
0.6176.7At3g15210820752ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation.S.X.H.G.
0.6075.7At2g01180814646ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.S.X.H.G.
0.5873.8At3g57530824920CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32)Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitroS.X.H.G.
0.5873.8At3g16720820924ATL2RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations.S.X.H.G.
0.5773.8At4g33920829536protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:mitochondrion, protein serine/threonine phosphatase complex;PMOFBVS.X.H.G.
0.5773.8At2g05940815147protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.5673.0At1g20510838639OPCL1 (OPC-8:0 COA LIGASE1)F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding;C:peroxisome;BOFMPAVS.X.H.G.
0.5673.0At1g29690839846CAD1 (constitutively activated cell death 1)Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
42.099.8GSM128882Mittler_1-6_MBF1c_Rep3_ATH1GSE5539Over-expression of MBF1c enhances stress tolerance
38.099.8GSM128881Mittler_1-5_MBF1c_Rep2_ATH1GSE5539Over-expression of MBF1c enhances stress tolerance
37.399.7GSM131267AtGen_6-1311_Cold(4°C)-Shoots-3.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.061e-344At1g75550843891glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAC.G.S.X.
0.046e-238At3g51060824270STY1 (STYLISH 1)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. STY1/STY2 double mutants showed defective style, stigma as well as serrated leaves.C.G.S.X.
0.026e-238At1g33360840230ATP-dependent Clp protease ATP-binding subunit ClpX, putativeEncodes ClpX3, a subunit of the Clp protease complex.C.G.S.X.
0.012e-136At5g67470836883formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:in 7 components;MPOFBVAC.G.S.X.
0.042e-136At4g34970829649ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)F:actin binding;P:biological_process unknown;C:intracellular;MPOFC.G.S.X.
0.022e-136At4g35230829676BSK1 (BR-SIGNALING KINASE 1)Encodes BR-signaling kinase 1 (BSK1), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710). Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.052e-240Glycine maxGmaAffx.23899.1.S1_atBM891498--5e-2At5g42780AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27)C.G.S.X.
0.031e-136Hordeum vulgareContig12247_atContig12247--3e-1At3g04640glycine-rich proteinC.G.S.X.
0.067e-342Oryza sativaOsAffx.5748.1.S1_at---0C.G.S.X.
0.068e-238Populus trichocarpaPtpAffx.212221.1.S1_atpmrna23958hypothetical protein-7e-18At5g18180Gar1 RNA-binding region family proteinC.G.S.X.
0.074e-342Triticum aestivumTaAffx.112803.2.S1_atCA620782--4e-3At3g04640glycine-rich proteinC.G.S.X.
0.031e+032Vitis vinifera1615714_atCF201075.1--3e-4At1g07250UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4)C.G.S.X.
0.034e-134Zea maysZm.17327.2.S1_a_atCF628822--1e+0At3g04640glycine-rich proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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