CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g04640

Gene name glycine-rich protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.85 92.4 At3g04640 819622 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVA S.X. H.G.
0.70 83.5 At2g33580 817923 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein F:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:plasma membrane;MPOBFVA S.X. H.G.
0.61 76.7 At3g15210 820752 ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4) Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation. S.X. H.G.
0.60 75.7 At2g01180 814646 ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1) Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves. S.X. H.G.
0.58 73.8 At3g57530 824920 CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitro S.X. H.G.
0.58 73.8 At3g16720 820924 ATL2 RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. S.X. H.G.
0.57 73.8 At4g33920 829536 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:mitochondrion, protein serine/threonine phosphatase complex;PMOFBV S.X. H.G.
0.57 73.8 At2g05940 815147 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.56 73.0 At1g20510 838639 OPCL1 (OPC-8:0 COA LIGASE1) F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding;C:peroxisome;BOFMPAV S.X. H.G.
0.56 73.0 At1g29690 839846 CAD1 (constitutively activated cell death 1) Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
77.2 99.9 E-MEXP-1443-raw-cel-1581869921
53.5 99.8 E-MEXP-1443-raw-cel-1581869863
52.1 99.8 E-MEXP-807-raw-cel-1173273060
49.2 99.8 E-MEXP-807-raw-cel-1173273252
49.0 99.8 E-MEXP-807-raw-cel-1173273144
45.4 99.8 E-MEXP-807-raw-cel-1173273116
42.0 99.8 GSM128882 Mittler_1-6_MBF1c_Rep3_ATH1 GSE5539 Over-expression of MBF1c enhances stress tolerance
41.8 99.8 E-MEXP-807-raw-cel-1173273170
38.0 99.8 GSM128881 Mittler_1-5_MBF1c_Rep2_ATH1 GSE5539 Over-expression of MBF1c enhances stress tolerance
37.3 99.7 GSM131267 AtGen_6-1311_Cold(4°C)-Shoots-3.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 1e-3 44 At1g75550 843891 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA C.G. S.X.
0.04 6e-2 38 At3g51060 824270 STY1 (STYLISH 1) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. STY1/STY2 double mutants showed defective style, stigma as well as serrated leaves. C.G. S.X.
0.02 6e-2 38 At1g33360 840230 ATP-dependent Clp protease ATP-binding subunit ClpX, putative Encodes ClpX3, a subunit of the Clp protease complex. C.G. S.X.
0.01 2e-1 36 At5g67470 836883 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:in 7 components;MPOFBVA C.G. S.X.
0.04 2e-1 36 At4g34970 829649 ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) F:actin binding;P:biological_process unknown;C:intracellular;MPOF C.G. S.X.
0.02 2e-1 36 At4g35230 829676 BSK1 (BR-SIGNALING KINASE 1) Encodes BR-signaling kinase 1 (BSK1), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710). Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-2 40 Glycine max GmaAffx.23899.1.S1_at BM891498 - - 5e-2 At5g42780 AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27) C.G. S.X.
0.03 1e-1 36 Hordeum vulgare Contig12247_at Contig12247 - - 3e-1 At3g04640 glycine-rich protein C.G. S.X.
0.06 7e-3 42 Oryza sativa OsAffx.5748.1.S1_at - - - 0 C.G. S.X.
0.06 8e-2 38 Populus trichocarpa PtpAffx.212221.1.S1_at pmrna23958 hypothetical protein - 7e-18 At5g18180 Gar1 RNA-binding region family protein C.G. S.X.
0.07 4e-3 42 Triticum aestivum TaAffx.112803.2.S1_at CA620782 - - 4e-3 At3g04640 glycine-rich protein C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1615714_at CF201075.1 - - 3e-4 At1g07250 UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4) C.G. S.X.
0.03 4e-1 34 Zea mays Zm.17327.2.S1_a_at CF628822 - - 1e+0 At3g04640 glycine-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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