CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g04550

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g04550 819611 unknown protein F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPMO S.X. H.G.
0.29 30.3 At2g32480 817809 membrane-associated zinc metalloprotease, putative F:protein binding, metalloendopeptidase activity;P:proteolysis;C:chloroplast, plastid;BOPAM S.X. H.G.
0.29 30.3 At4g16390 827333 - F:unknown;P:unknown;C:chloroplast;POFMBA S.X. H.G.
0.13 5.8 At4g29590 829080 methyltransferase F:methyltransferase activity;P:metabolic process;C:chloroplast;BOPAF S.X. H.G.
0.03 0.6 At3g59980 825168 tRNA-binding region domain-containing protein F:tRNA binding;P:unknown;C:chloroplast;BOMAFP S.X. H.G.
0.02 0.4 At1g80480 844387 PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17) F:unknown;P:unknown;C:plastid chromosome, chloroplast stroma, chloroplast, nucleoid;OBMFPAV S.X. H.G.
0.01 0.2 At5g48220 834875 indole-3-glycerol phosphate synthase, putative F:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFP S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
148.1 99.9 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
60.3 99.8 GSM133770 Lindsey_1-22_torpedo-apical_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
59.6 99.8 GSM284391 Arabidopsis GPE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
55.1 99.8 GSM133772 Lindsey_1-24_torpedo-apical_Rep6_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
30.3 99.7 GSM135549 brm-101_rep1 GSE5806 Identification of differentially expressed genes in brm-101 and syd-2 mutants
26.7 99.7 GSM135551 syd-2_rep1 GSE5806 Identification of differentially expressed genes in brm-101 and syd-2 mutants
24.2 99.6 GSM133763 Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
23.5 99.6 GSM269822 T6 leaf-well watered-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
22.9 99.6 GSM133767 Lindsey_1-19_torpedo-basal_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
21.0 99.6 E-TABM-52-raw-cel-1583683646
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.25 6e-26 119 At5g28500 832943 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPO C.G. S.X.
0.01 4e-2 40 At4g31040 829231 proton extrusion protein-related F:unknown;P:biological_process unknown;C:integral to membrane, chloroplast;PBOF C.G. S.X.
0.02 2e-1 38 At1g72610 843593 GER1 (GERMIN-LIKE PROTEIN 1) germin-like protein (GLP1) C.G. S.X.
0.01 2e-1 38 At1g51170 841540 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MOFPBVA C.G. S.X.
0.01 7e-1 36 At5g42340 834240 binding / ubiquitin-protein ligase F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;MPOFBV C.G. S.X.
0.03 7e-1 36 At5g12890 831129 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF C.G. S.X.
0.01 7e-1 36 At4g30991 - C.G. S.X.
0.02 7e-1 36 At4g23680 828468 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P C.G. S.X.
0.01 7e-1 36 At3g48520 824011 CYP94B3 member of CYP94B C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-3 44 Glycine max GmaAffx.4466.1.S1_at BI701708 - - 2e-3 At3g04550 unknown protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig14749_at Contig14749 - - 2e+0 At5g05365 metal ion binding C.G. S.X.
0.02 5e+0 34 Oryza sativa OsAffx.27874.1.S1_at - - - 0 C.G. S.X.
0.02 4e+0 34 Populus trichocarpa PtpAffx.93419.1.A1_at DN485520 hypothetical protein - 1e+0 At5g42520 ATBPC6 C.G. S.X.
0.02 7e-1 36 Triticum aestivum TaAffx.15836.1.S1_at BQ803322 - - 9e-1 At1g21323 unknown protein C.G. S.X.
0.05 3e-6 52 Vitis vinifera 1611351_at CD717072 - - 3e-6 At3g04550 unknown protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.10670.1.A1_at CO529849 hypothetical protein LOC100280379 - 1e+0 At5g11410 protein kinase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage