CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g04420

Gene name anac048 (Arabidopsis NAC domain containing protein 48)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.39 48.4 At3g04420 819597 anac048 (Arabidopsis NAC domain containing protein 48) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO S.X. H.G.
0.70 83.5 At5g07060 830597 zinc finger (CCCH-type) family protein F:RNA binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;FMOPV S.X. H.G.
0.55 70.6 At5g25290 832601 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.39 48.4 At3g26010 822198 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.31 33.8 At1g77655 844101 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.27 26.2 At2g31470 817705 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.25 22.6 At5g63750 836495 IBR domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:intracellular;MPOF S.X. H.G.
0.24 20.7 At3g59190 825088 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.22 17.5 At1g67370 843058 ASY1 (ASYNAPTIC 1) meiotic asynaptic mutant 1 (ASY1). ASY1 protein is initially distributed as numerous foci throughout the chromatin. During early G2, the foci are juxtaposed to the nascent chromosome axes to form a continuous axis associated signal. S.X. H.G.
0.20 14.4 At5g18810 831999 SCL28 encodes an SC35-like splicing factor of 28 kD localized to the nuclear specks. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
236.7 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
187.0 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
182.3 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
181.8 100.0 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
170.8 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
162.4 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
154.9 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
150.4 99.9 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
149.5 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
149.3 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.74 1e-134 480 At1g02220 839476 ANAC003 (Arabidopsis NAC domain containing protein 3) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PF C.G. S.X.
0.45 5e-38 159 At1g02250 839390 anac005 (Arabidopsis NAC domain containing protein 5) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.47 3e-30 133 At1g02230 837630 ANAC004 (Arabidopsis NAC domain containing protein 4) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PFO C.G. S.X.
0.19 2e-15 83 At3g04410 819596 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.02 1e-4 48 At5g40280 834026 ERA1 (ENHANCED RESPONSE TO ABA 1) encodes a beta subunit of farnesyl-trans-transferase, which is involved in meristem organization and ABA-mediated signal transduction pathway. Mutant phenotypes have been observed in meristem organization, and response to abscisic acid and drought. C.G. S.X.
0.02 1e-4 48 At4g08550 826415 electron carrier/ protein disulfide oxidoreductase F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;OMBFPVA C.G. S.X.
0.01 8e-3 42 At2g18100 816322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FOMBPA C.G. S.X.
0.04 8e-3 42 At1g02210 839482 regulator of shoot apical meristem-related F:DNA binding;P:regulation of transcription;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-2 42 Glycine max GmaAffx.5822.1.S1_at BU080575 - - 1e-2 At5g61590 AP2 domain-containing transcription factor family protein C.G. S.X.
0.03 6e-2 38 Hordeum vulgare HVSMEf0017C20f2_s_at HVSMEf0017C20f2 - - 3e+0 At3g55240 - C.G. S.X.
0.03 6e-2 40 Oryza sativa Os12g0538700 AK063610.1 - AT.I.24-1 protein (Fragment) 3e-2 At3g02000 ROXY1 C.G. S.X.
0.04 1e-2 42 Populus trichocarpa PtpAffx.205606.1.S1_at pmrna11066 hypothetical protein - 4e-1 At5g13880 unknown protein C.G. S.X.
0.03 1e-1 38 Triticum aestivum Ta.18638.1.S1_at BQ170645 - - 5e-4 At3g15500 ANAC055 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55) C.G. S.X.
0.03 1e-2 40 Vitis vinifera 1612297_at CA812105 hypothetical protein LOC100244787 - 2e-2 At5g12410 THUMP domain-containing protein C.G. S.X.
0.03 9e-1 34 Zea mays ZmAffx.283.1.A1_at AI670414 - - 3e+0 At3g23175 lesion inducing protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0007275 The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
L GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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