Gene omics information

Query gene ID At3g04240
Gene name SEC (secret agent)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g04240819579SEC (secret agent)Has O-linked N-acetyl glucosamine transferase activity. Similar to Arabidopsis SPY gene.S.X.H.G.
0.4963.5At2g47410819354nucleotide bindingF:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAVS.X.H.G.
0.3643.6At1g15780838147unknown proteinF:unknown;P:unknown;C:cellular_component unknown;OMFPBVAS.X.H.G.
0.3643.6At5g66810836814-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOS.X.H.G.
0.3439.8At5g46210834663CUL4 (CULLIN4)Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1.S.X.H.G.
0.3338.1At4g24740828576AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins.S.X.H.G.
0.3235.7At3g07160819903ATGSL10 (glucan synthase-like 10)Encodes GSL10, a member of the Glucan Synthase-Like (GSL) family believed to be involved in the synthesis of the cell wall component callose. GSL10 is required for male gametophyte development and plant growth. Has a role in entry of microspores into mitosis. GSL10 mutation leads to perturbation of microspore division symmetry, irregular callose deposition and failure of generative cell engulfment by the vegetative cell cytoplasm. Also refer to GSL8 (At2g36850).S.X.H.G.
0.3133.8At1g07990837314SIT4 phosphatase-associated family proteinF:unknown;P:biological_process unknown;C:endomembrane system;MFOPBVS.X.H.G.
0.3032.1At4g36960829850RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBAS.X.H.G.
0.2930.3At5g61140836235DEAD box RNA helicase, putativeEncodes a predicted protein with 30% identity with MER3/RCK.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
25.799.7GSM184910Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
24.599.6GSM142642MC002_ATH1_A7.2-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
22.599.6GSM142643MC002_ATH1_A7.3-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
21.699.6GSM204069protoplast_hypoxia_rep1GSE8248Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
19.499.6GSM184918Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
19.399.6GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
17.599.5GSM142641MC002_ATH1_A7.1-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
16.699.5GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
16.599.5GSM142646MC002_ATH1_A8.3-dubos-aihGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
16.199.5GSM142624MC002_ATH1_A1.2-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.019e-240At3g556463769719unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMC.G.S.X.
0.019e-240At1g61010842393CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I)F:protein binding;P:mRNA polyadenylation;C:mRNA cleavage and polyadenylation specificity factor complex, nucleus;BOMAFPVC.G.S.X.
0.004e-138At4g30150829138-F:unknown;P:unknown;C:unknown;POMVBC.G.S.X.
0.014e-138At3g11080820279AtRLP35 (Receptor Like Protein 35)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMBOFAVC.G.S.X.
0.014e-138At2g38470818429WRKY33Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.C.G.S.X.
0.014e-138At1g72890843620disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMOC.G.S.X.
0.012e+036At5g155816241099unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.211e-1483Glycine maxGmaAffx.88128.1.S1_atBU761260--2e-15At3g04240SEC (secret agent)C.G.S.X.
0.241e-1481Hordeum vulgareContig7067_atContig7067--2e-14At3g04240SEC (secret agent)C.G.S.X.
0.243e-1275Oryza sativaOs.18704.1.S1_a_at---0C.G.S.X.
0.394e-51204Populus trichocarpaPtp.249.1.S1_atCK087721hypothetical protein-2e-51At3g04240SEC (secret agent)C.G.S.X.
0.142e-1275Triticum aestivumTa.28845.1.S1_atBJ274159--1e-12At3g04240SEC (secret agent)C.G.S.X.
0.114e-26119Vitis vinifera1618071_atCF518536hypothetical protein LOC100244912-4e-26At3g04240SEC (secret agent)C.G.S.X.
0.312e-1377Zea maysZm.3847.1.S1_atAY112527.1--3e-13At3g04240SEC (secret agent)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006493The formation of O-glycans by addition of glycosyl groups either to the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or to the phenol group of peptidyl-tyrosine.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00359Link to KaPPA-View 4Glucosyltransferase



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
01100Link to KEGG PATHWAYMetabolic pathways
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