CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g04060

Gene name anac046 (Arabidopsis NAC domain containing protein 46)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.32 35.7 At3g04060 819561 anac046 (Arabidopsis NAC domain containing protein 46) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P S.X. H.G.
0.29 30.3 At4g23450 828444 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:chloroplast;PMOFV S.X. H.G.
0.27 26.2 At4g20110 827757 vacuolar sorting receptor, putative F:calcium ion binding;P:intracellular protein transport, N-terminal protein myristoylation, protein targeting to vacuole;C:trans-Golgi network, integral to plasma membrane, Golgi transport complex, membrane;MOPBFA S.X. H.G.
0.22 17.5 At1g56010 842052 NAC1 Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). NAC1 (NAC1) S.X. H.G.
0.20 14.4 At3g26440 822248 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO S.X. H.G.
0.18 11.4 At5g25820 832651 exostosin family protein F:catalytic activity;P:unknown;C:membrane;OMPBFVA S.X. H.G.
0.11 4.1 At5g63970 836518 copine-related F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPV S.X. H.G.
0.07 1.9 At4g01910 827105 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO S.X. H.G.
0.03 0.6 At3g63010 825476 GID1B (GA INSENSITIVE DWARF1B) Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
140.0 99.9 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
103.7 99.9 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
81.4 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
48.2 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
46.6 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.0 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.9 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
45.1 99.8 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
44.1 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.9 99.8 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.41 6e-93 341 At5g18270 831945 ANAC087 F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.21 2e-28 127 At5g61430 836264 ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.16 2e-25 117 At5g07680 830661 ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.08 6e-19 95 At5g53950 835478 CUC2 (CUP-SHAPED COTYLEDON 2) Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2. C.G. S.X.
0.12 3e-18 93 At5g39610 833957 ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6) Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves. This gene is upregulated in response to salt stress in wildtype as well as NTHK1 transgenic lines although in the latter case the induction was drastically reduced. It was also upregulated by ABA, ACC and NAA treatment, although in the latter two cases, the induction occurred relatively late when compared with NaCl or ABA treatments. Note: this protein (AtNAC6) on occasion has also been referred to as AtNAC2, not to be confused with the AtNAC2 found at locus AT3G15510. C.G. S.X.
0.12 4e-17 89 At3g18400 821369 anac058 (Arabidopsis NAC domain containing protein 58) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO C.G. S.X.
0.10 6e-16 85 At3g29035 822547 ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3) Encodes a protein with transcription factor activity. Note: this protein (AT3G29035) on occasion has also been referred to as AtNAC3, not to be confused with the AtNAC3 found at locus AT3G15500. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 3e-12 73 Glycine max Gma.8438.1.S1_at AF532619.1 no apical meristem-like protein /// NAC domain protein NAC5 - 8e-56 At5g07680 ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80) C.G. S.X.
0.14 1e-18 93 Hordeum vulgare Contig9284_at Contig9284 - - 3e-18 At3g04060 anac046 (Arabidopsis NAC domain containing protein 46) C.G. S.X.
0.11 5e-15 83 Oryza sativa Os04g0460600 AB028181.1 - No apical meristem (NAM) protein domain containingprotein 9e-25 At5g18270 ANAC087 C.G. S.X.
0.33 8e-16 85 Populus trichocarpa PtpAffx.212205.1.S1_at pmrna23927 NAC domain protein, IPR003441 - 2e-23 At5g18270 ANAC087 C.G. S.X.
0.17 3e-15 83 Triticum aestivum TaAffx.117376.1.S1_at BQ605728 - - 1e-15 At3g04060 anac046 (Arabidopsis NAC domain containing protein 46) C.G. S.X.
0.06 3e-9 61 Vitis vinifera 1610506_at CB913489 - - 3e-7 At5g18270 ANAC087 C.G. S.X.
0.10 1e-12 73 Zea mays Zm.5914.1.A1_at CA402103 nac4 protein - 4e-12 At3g04060 anac046 (Arabidopsis NAC domain containing protein 46) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0007275 The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
L GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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