CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g04010

Gene name glycosyl hydrolase family 17 protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.76 87.4 At3g04010 819556 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOB S.X. H.G.
0.75 86.9 At5g08240 830720 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
0.68 82.2 At1g01340 838832 ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10) member of Cyclic nucleotide gated channel family S.X. H.G.
0.63 78.1 At3g46930 823846 protein kinase family protein F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA S.X. H.G.
0.57 73.8 At5g11110 830979 ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F) Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation. S.X. H.G.
0.55 70.6 At1g78895 844227 - F:unknown;P:biological_process unknown;C:endomembrane system, endoplasmic reticulum;P S.X. H.G.
0.55 70.6 At1g12640 837820 membrane bound O-acyl transferase (MBOAT) family protein F:acyltransferase activity;P:biological_process unknown;C:plasma membrane, membrane;MBOFP S.X. H.G.
0.53 68.6 At5g02100 831841 UNE18 (UNFERTILIZED EMBRYO SAC 18) Encodes a protein that binds to beta-sitosterol and localizes to the ER. The WFDE motif in ORP3a appears to be important for a direct interaction with PVA12 [Plant VAMP-Associated protein 12]. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent. S.X. H.G.
0.52 67.4 At4g15130 827179 catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase F:choline-phosphate cytidylyltransferase activity, catalytic activity, nucleotidyltransferase activity;P:response to cold, biosynthetic process;C:unknown;OMBFPA S.X. H.G.
0.51 66.3 At2g41630 818761 TFIIB (TRANSCRIPTION FACTOR II B) Encodes the transcription factor TFIIB. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
161.1 99.9 E-ATMX-35-raw-cel-1574334800
156.7 99.9 GSM184845 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
147.2 99.9 GSM184844 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
129.0 99.9 E-ATMX-35-raw-cel-1574334816
112.7 99.9 GSM184914 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
81.8 99.9 GSM131276 AtGen_6-1512_Cold(4°C)-Shoots-12.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
77.1 99.9 GSM184632 Arabidopsis, whole roots, 140 mM NaCl, replicate 1 GSE7636 Expression analysis of the effect of protoplasting and FACS sorting in roots
72.3 99.9 E-ATMX-35-raw-cel-1574334832
70.8 99.9 GSM184633 Arabidopsis, whole roots, 140 mM NaCl, replicate 2 GSE7636 Expression analysis of the effect of protoplasting and FACS sorting in roots
70.4 99.9 E-MEXP-1443-raw-cel-1581869863
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.58 1e-95 351 At5g18220 831940 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOB C.G. S.X.
0.17 8e-7 56 At1g64760 842784 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFOB C.G. S.X.
0.03 2e-4 48 At5g20870 832210 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOB C.G. S.X.
0.06 2e-4 48 At4g31140 829242 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, vacuole, anchored to membrane, plant-type cell wall;PFOB C.G. S.X.
0.04 2e-4 48 At3g24330 822022 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFBO C.G. S.X.
0.10 2e-4 48 At2g19440 816463 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:plasma membrane, anchored to membrane;PFOB C.G. S.X.
0.07 8e-4 46 At5g64790 836600 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-9 65 Glycine max GmaAffx.86343.1.S1_at BU548431 - - 4e-7 At1g64760 glycosyl hydrolase family 17 protein C.G. S.X.
0.02 6e+0 32 Hordeum vulgare Contig9234_at Contig9234 - - 2e-1 At1g37000 beta-galactosidase C.G. S.X.
0.04 4e-1 38 Oryza sativa OsAffx.31336.1.S1_x_at - - - 0 C.G. S.X.
0.05 1e-6 56 Populus trichocarpa PtpAffx.35226.1.S1_at CV274935 hypothetical protein - 1e-7 At5g58090 glycosyl hydrolase family 17 protein C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.6469.1.S1_at CA685359 Peroxidase - 4e+0 At2g46330 AGP16 (ARABINOGALACTAN PROTEIN 16) C.G. S.X.
0.03 6e-5 48 Vitis vinifera 1612012_at CF207478 hypothetical protein LOC100242215 - 7e-5 At3g04010 glycosyl hydrolase family 17 protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.9625.1.A1_x_at BM340508 Hypothetical protein LOC100216879 - 3e-1 At4g33660 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase
00436 Callose/glucan degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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