CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g03800

Gene name SYP131 (SYNTAXIN OF PLANTS 131)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.87 93.5 At3g03800 821141 SYP131 (SYNTAXIN OF PLANTS 131) member of SYP13 Gene Family S.X. H.G.
0.82 90.9 At2g26410 817181 Iqd4 (IQ-domain 4) F:calmodulin binding;P:unknown;C:unknown;PMOBVFA S.X. H.G.
0.81 90.4 At5g23270 832391 STP11 (SUGAR TRANSPORTER 11) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA S.X. H.G.
0.81 90.4 At3g20190 821563 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;PMOFBVA S.X. H.G.
0.81 90.4 At3g56600 824827 inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:biological_process unknown;C:unknown;PMOFB S.X. H.G.
0.80 89.8 At2g18470 816362 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVA S.X. H.G.
0.80 89.8 At5g50830 835155 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OMFBPVA S.X. H.G.
0.79 89.1 At2g23900 816922 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOMA S.X. H.G.
0.79 89.1 At5g20410 832163 MGD2 Encodes a type B monogalactosyldiacylglycerol (MGDG) synthase. Strongly induced by phosphate deprivation, and in non-photosynthetic tissues. Does not contribute to galactolipid synthesis under Pi-sufficient conditions but does under Pi starvation. S.X. H.G.
0.79 89.1 At1g68110 843139 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;PMFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
441.6 100.0 E-MEXP-285-raw-cel-440782725
339.2 100.0 E-MEXP-285-raw-cel-440782791
199.5 100.0 E-ATMX-35-raw-cel-1574334864
165.0 100.0 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
163.4 99.9 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
147.4 99.9 E-ATMX-35-raw-cel-1574334880
146.3 99.9 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
136.4 99.9 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
132.9 99.9 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
123.0 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.28 1e-19 97 At5g08080 830702 SYP132 (SYNTAXIN OF PLANTS 132) member of SYP13 Gene Family C.G. S.X.
0.03 7e-3 42 At3g11820 820355 SYP121 (SYNTAXIN OF PLANTS 121) Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance. C.G. S.X.
0.01 1e-1 38 At4g08160 826365 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein Encodes a putative glycosyl hydrolase family 10 protein (xylanase). C.G. S.X.
0.01 1e-1 38 At3g51550 824318 FER (FERONIA) Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception. C.G. S.X.
0.02 1e-1 38 At1g71140 843454 MATE efflux family protein F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:plasma membrane, membrane;BOPFMA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 2e-4 48 Glycine max GmaAffx.25145.1.A1_at AW830552 - - 2e-23 At1g08560 SYP111 (SYNTAXIN OF PLANTS 111) C.G. S.X.
0.06 1e-2 40 Hordeum vulgare Contig6952_at Contig6952 - - 4e-5 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) C.G. S.X.
0.11 1e-3 46 Oryza sativa Os07g0164300 AK099351.1 - Syntaxin, N-terminal domain containing protein 1e-11 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) C.G. S.X.
0.40 7e-44 178 Populus trichocarpa PtpAffx.58146.1.S1_at CV261342 hypothetical protein - 6e-63 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) C.G. S.X.
0.08 5e-7 56 Triticum aestivum Ta.5302.1.S1_at BJ285699 - - 6e-7 At3g03800 SYP131 (SYNTAXIN OF PLANTS 131) C.G. S.X.
0.20 6e-4 44 Vitis vinifera 1619882_at CF604338 hypothetical protein LOC100265088 - 9e-17 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) C.G. S.X.
0.04 8e-1 34 Zea mays Zm.9852.1.A1_at BM381073 syntaxin 121 - 5e-3 At5g63740 zinc finger protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
S GO:0006944 The joining of two lipid bilayers to form a single membrane.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
04130 SNARE interactions in vesicular transport
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