CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g03470

Gene name CYP89A9

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g03470 821250 CYP89A9 member of CYP89A S.X. H.G.
0.57 73.8 At3g44880 823622 ACD1 (ACCELERATED CELL DEATH 1) Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene. S.X. H.G.
0.44 57.2 At1g13990 837959 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.40 50.8 At1g31820 840072 amino acid permease family protein F:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPA S.X. H.G.
0.29 30.3 At5g13800 831225 hydrolase, alpha/beta fold family protein F:hydrolase activity, pheophytinase activity;P:chlorophyll catabolic process;C:chloroplast;BOPMAF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
74.4 99.9 GSM131537 ATGE_25_A GSE5630 AtGenExpress: Developmental series (leaves)
72.4 99.9 GSM131539 ATGE_25_C GSE5630 AtGenExpress: Developmental series (leaves)
68.1 99.9 GSM133819 Yang_1-4_old-pod_Rep2_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
66.5 99.8 GSM131303 AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
63.2 99.8 GSM131538 ATGE_25_B GSE5630 AtGenExpress: Developmental series (leaves)
61.7 99.8 GSM268245 dor-drought-1, biological rep 1 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
61.7 99.8 GSM133821 Yang_1-6_old-pod_Rep3_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
57.2 99.8 GSM131604 ATGE_41_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
51.6 99.8 GSM205159 protoplast_KIN10_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
50.5 99.8 GSM131603 ATGE_41_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 1e-5 52 At1g64940 842802 CYP89A6 member of CYP89A C.G. S.X.
0.07 5e-5 50 At1g64950 842803 CYP89A5 member of CYP89A C.G. S.X.
0.06 1e-2 42 At2g12190 815688 cytochrome P450, putative F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV C.G. S.X.
0.01 5e-2 40 At2g01320 814660 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:chloroplast;BOMFAPV C.G. S.X.
0.01 8e-1 36 At5g46910 834736 transcription factor jumonji (jmj) family protein F:transcription factor activity;P:response to chitin, regulation of transcription;C:nucleus;MFPO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 4e-3 44 Glycine max GmaAffx.63361.2.S1_s_at AW308746 - - 1e-3 At3g03470 CYP89A9 C.G. S.X.
0.02 4e-1 36 Hordeum vulgare Contig14020_at Contig14020 - - 4e-7 At3g18170 transferase, transferring glycosyl groups C.G. S.X.
0.02 4e-1 38 Oryza sativa OsAffx.23374.1.S1_at - - - 0 C.G. S.X.
0.08 4e-3 44 Populus trichocarpa Ptp.2726.1.S1_at DN492953 cytochrome P450 - 2e-3 At3g03470 CYP89A9 C.G. S.X.
0.03 8e-1 36 Triticum aestivum Ta.21325.1.S1_at CA670423 - - 1e-5 At1g64940 CYP89A6 C.G. S.X.
0.10 2e-7 56 Vitis vinifera 1622811_at CB006666 hypothetical protein LOC100240884 - 3e-11 At1g64900 CYP89A2 (CYTOCHROME P450 89A2) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.11922.1.A1_at CK370631 transposon protein - 1e-1 At2g12190 cytochrome P450, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00347 Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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