Gene omics information

Query gene ID At3g03450
Gene name RGL2 (RGA-LIKE 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2624.4At3g03450821251RGL2 (RGA-LIKE 2)Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development.S.X.H.G.
0.5065.3At2g40220818614ABI4 (ABA INSENSITIVE 4)encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.S.X.H.G.
0.4253.9At5g17490831615RGL3 (RGA-LIKE PROTEIN 3)DELLA subfamily member involved in GA signal transductionS.X.H.G.
0.4050.8At3g05190819683aminotransferase class IV family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;OBPAFMS.X.H.G.
0.4050.8At5g57390835845AIL5 (AINTEGUMENTA-LIKE 5)Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.S.X.H.G.
0.2522.6At5g24130832478unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMS.X.H.G.
0.2522.6At5g66460836778(1-4)-beta-mannan endohydrolase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOAS.X.H.G.
0.2014.4At1g60090842304BGLU4 (BETA GLUCOSIDASE 4)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAS.X.H.G.
0.1710.2At1g04920839382ATSPS3F (sucrose phosphate synthase 3F)Encodes a protein with putative sucrose-phosphate synthase activity.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
95.999.9GSM133309RIKEN-NAKABAYASHI4BGSE5700AtGenExpress: Effect of ABA during seed imbibition
93.699.9GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibition
85.799.9GSM133120RIKEN-YAMAUCHI2BGSE5687AtGenExpress: Different temperature treatment of seeds
76.099.9E-MEXP-1474-raw-cel-1593932673
70.299.9GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibition
63.299.8GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibition
62.699.8E-MEXP-1474-raw-cel-1593932481
62.199.8GSM133119RIKEN-YAMAUCHI2AGSE5687AtGenExpress: Different temperature treatment of seeds
58.199.8GSM173623Col-0 rep2GSE7227microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
55.099.8E-MEXP-1474-raw-cel-1593932577
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.529e-50198At5g17490831615RGL3 (RGA-LIKE PROTEIN 3)DELLA subfamily member involved in GA signal transductionC.G.S.X.
0.092e-1791At2g01570814686RGA1 (REPRESSOR OF GA1-3 1)Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.C.G.S.X.
0.094e-1583At1g14920838057GAI (GIBBERELLIC ACID INSENSITIVE)Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. GAI may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA.C.G.S.X.
0.186e-1169At1g66350842953RGL1 (RGA-LIKE 1)Negative regulator of GA responses, member of GRAS family of transcription factors. Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. RGL1 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Involved in flower and fruit development.C.G.S.X.
0.021e-552At5g66770836810scarecrow transcription factor family proteinF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMBFOC.G.S.X.
0.023e-344At3g50650824228scarecrow-like transcription factor 7 (SCL7)F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMFOBVC.G.S.X.
0.011e-242At4g36710829824transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBOC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.238e-550Glycine maxGmaAffx.68920.1.S1_atCA935282--3e-5At3g03450RGL2 (RGA-LIKE 2)C.G.S.X.
0.031e-138Hordeum vulgareContig3135_atContig3135--3e-1At3g03450RGL2 (RGA-LIKE 2)C.G.S.X.
0.033e-242Oryza sativaOs01g0646300AY464568.1-GAI protein8e-4At5g17490RGL3 (RGA-LIKE PROTEIN 3)C.G.S.X.
0.152e-552Populus trichocarpaPtpAffx.45488.2.S1_atBP930560DELLA domain GRAS family transcription factor rga-like protein-2e-5At3g03450RGL2 (RGA-LIKE 2)C.G.S.X.
0.029e-136Triticum aestivumTaAffx.11185.2.A1_atCA630606--3e-1At2g40780RNA binding / translation initiation factorC.G.S.X.
0.096e-548Vitis vinifera1606777_s_atAF378125.1GAI1-8e-11At2g01570RGA1 (REPRESSOR OF GA1-3 1)C.G.S.X.
0.044e-136Zea maysZm.6402.2.A1_atAI855074Dwarf plant9-1e-2At5g17490RGL3 (RGA-LIKE PROTEIN 3)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009737A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
XGO:0009739A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus.
XGO:0080010Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH).
XGO:0009863A series of molecular signals mediated by salicylic acid.
XGO:0009867A series of molecular signals mediated by jasmonic acid.
XGO:0009651A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
XGO:0009723A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus.
XGO:0042538A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
XGO:0010187Any process that stops, prevents or reduces the frequency, rate or extent of seed germination.
SGO:0009740A series of molecular signals mediated by the detection of gibberellic acid.
SGO:0009938Any process that stops, prevents or reduces the frequency, rate or extent of gibberellic acid mediated signaling activity.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage