CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g03070

Gene name NADH-ubiquinone oxidoreductase-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At3g03070 821133 NADH-ubiquinone oxidoreductase-related F:unknown;P:unknown;C:mitochondrion;MFPO S.X. H.G.
0.89 94.6 At3g57785 824948 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;PFM S.X. H.G.
0.80 89.8 At2g28430 817391 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At4g21105 827858 cytochrome-c oxidase/ electron carrier F:electron carrier activity, cytochrome-c oxidase activity;P:unknown;C:mitochondrion, plasma membrane;P S.X. H.G.
0.57 73.8 At2g42310 818832 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;PFM S.X. H.G.
0.40 50.8 At4g26710 828778 ATP synthase subunit H family protein F:hydrogen ion transmembrane transporter activity;P:ATP hydrolysis coupled proton transport;C:vacuole;MPOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.7 99.0 GSM134513 Col-0_4day_dark_-lincomycin_rep1 GSE5759 red illumination w/o lincomycin
8.2 99.0 E-MEXP-1451-raw-cel-1585200266
7.3 98.8 E-TABM-62-raw-cel-720984459
7.2 98.8 E-MEXP-1474-raw-cel-1593932481
6.8 98.7 E-MEXP-1474-raw-cel-1593932609
6.2 98.6 E-MEXP-1474-raw-cel-1593932513
6.2 98.6 E-MEXP-1474-raw-cel-1593932833
6.1 98.5 E-TABM-62-raw-cel-720982885
5.8 98.4 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
5.8 98.4 E-MEXP-1474-raw-cel-1593932577
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 6e-1 34 At5g15400 831392 U-box domain-containing protein F:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;MFOP C.G. S.X.
0.01 6e-1 34 At2g17520 816258 IRE1A Encodes a endoribonuclease/protein kinase IRE1-like protein that is predicted to form a type I transmembrane protein structure and contain kinase/endoribonuclease domains at their C-terminal halves. The transcript levels for several ER-stress responsive genes, including six protein disulfide isomerases (PDIs), BiP2, and AtbZIP60 are not affected in ire1-2 null mutants. C.G. S.X.
0.03 6e-1 34 At1g19740 838563 ATP-dependent protease La (LON) domain-containing protein F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF C.G. S.X.
0.02 3e+0 32 At5g55590 835653 QRT1 (QUARTET 1) Encodes a protein with pectin methylesterase activity. No change in activity were detected in mutants defective in this gene, which was interpreted as a result of redundancy of product function with other pectin methylesterases. The gene product is required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation. C.G. S.X.
0.01 3e+0 32 At5g03800 831717 EMB175 (EMBRYO DEFECTIVE 175) Encodes a protein with a large central domain of 14 internal pentatricopeptide motifs (some degenerate) arranged in tandem. Mutations in this locus result in embryo lethality. C.G. S.X.
0.02 3e+0 32 At2g23530 816885 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 3e-22 105 Glycine max Gma.8354.1.S1_s_at BE658968 - - 4e-22 At3g03070 NADH-ubiquinone oxidoreductase-related C.G. S.X.
0.35 2e-21 101 Hordeum vulgare Contig4879_at Contig4879 - - 6e-21 At3g03070 NADH-ubiquinone oxidoreductase-related C.G. S.X.
0.16 5e-6 52 Oryza sativa Os.4732.1.S1_at - - - 0 C.G. S.X.
0.30 7e-20 97 Populus trichocarpa Ptp.6193.1.S1_at CV249273 hypothetical protein - 1e-19 At3g03070 NADH-ubiquinone oxidoreductase-related C.G. S.X.
0.22 4e-5 48 Triticum aestivum Ta.17220.1.S1_s_at CA618887 - - 8e-5 At3g03070 NADH-ubiquinone oxidoreductase-related C.G. S.X.
0.44 4e-33 139 Vitis vinifera 1609322_at CF415305 hypothetical protein LOC100244359 - 2e-32 At3g03070 NADH-ubiquinone oxidoreductase-related C.G. S.X.
0.17 1e-3 42 Zea mays Zm.4222.1.S1_at AY108711.1 mitochondrial NADH ubiquinone oxidoreductase 13kD-like subunit - 7e-3 At3g03070 NADH-ubiquinone oxidoreductase-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00190 Oxidative phosphorylation
01100 Metabolic pathways
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