CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g02640

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.94 96.7 At3g02640 821289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO S.X. H.G.
0.94 96.7 At4g05190 825867 ATK5 (ARABIDOPSIS THALIANA KINESIN 5) ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts. S.X. H.G.
0.93 96.4 At1g76310 843964 CYCB2 core cell cycle genes S.X. H.G.
0.86 93.1 At3g25980 822195 mitotic spindle checkpoint protein, putative (MAD2) F:DNA binding;P:mitosis, mitotic cell cycle spindle assembly checkpoint;C:endomembrane system;MFOP S.X. H.G.
0.82 90.9 At4g15830 827264 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.82 90.9 At4g33260 829462 CDC20.2 putative cdc20 protein (CDC20.2) S.X. H.G.
0.74 86.1 At1g18370 838418 HIK (HINKEL) Mutant has cytokinesis defects; seedling lethal S.X. H.G.
0.71 84.2 At5g36710 833636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.67 81.6 At1g76540 843987 CDKB2 Encodes a cyclin-dependent protein kinase involved in regulation of the G2/M transition of the mitotic cell cycle. Specifically binds to the cyclin CYCD4;1, expressed in shoot meristem, young leaves and vascular tissue during the G2/M phase. Required for proper organization of the shoot apical meristem and for hormone signaling. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.8 99.7 E-MEXP-1797-raw-cel-1669767976
29.6 99.7 E-MEXP-1797-raw-cel-1669767958
26.1 99.7 GSM131674 ATGE_49_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
23.9 99.6 E-TABM-19-raw-cel-489757236
23.9 99.6 GSM133944 Weigel_2-36_CHIP-214_D_Rep3_ATH1 GSE5746 FRI FLC combos
23.2 99.6 GSM131662 ATGE_29_B2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
22.7 99.6 GSM131673 ATGE_49_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
22.6 99.6 GSM131661 ATGE_29_A2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
22.6 99.6 GSM131672 ATGE_48_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
21.9 99.6 GSM134206 Murray_3-3_D5-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.64 3e-75 282 At5g16250 831485 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.12 1e-3 44 At5g36710 833636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.12 1e-3 44 At5g36800 833647 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;P C.G. S.X.
0.02 1e+0 34 At5g15150 831367 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem. C.G. S.X.
0.02 1e+0 34 At5g64260 836547 EXL2 (EXORDIUM LIKE 2) F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PB C.G. S.X.
0.01 1e+0 34 At5g09400 830799 KUP7 potassium transporter C.G. S.X.
0.03 1e+0 34 At5g23280 832392 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMO C.G. S.X.
0.01 1e+0 34 At4g36400 829792 FAD linked oxidase family protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:biological_process unknown;C:mitochondrion;BOFMAP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 4e-4 46 Glycine max GmaAffx.82528.2.S1_at BI702248 - - 2e-4 At3g02640 unknown protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HT05G18u_at HT05G18u - - 4e+0 At1g47271 - C.G. S.X.
0.04 2e-3 44 Oryza sativa Os01g0896400 AK107067.1 - Conserved hypothetical protein 4e-1 At1g54215 proline-rich family protein C.G. S.X.
0.20 3e-5 50 Populus trichocarpa PtpAffx.44301.1.A1_s_at CV237484 hypothetical protein - 3e-5 At3g02640 unknown protein C.G. S.X.
0.05 5e-3 42 Triticum aestivum TaAffx.91506.1.S1_s_at BJ315107 - - 6e-2 At5g36710 unknown protein C.G. S.X.
0.06 1e+0 32 Vitis vinifera 1622613_at CF510899 - - 2e-2 At4g02000 unknown protein C.G. S.X.
0.06 3e-5 48 Zea mays Zm.17534.2.S1_at CF627668 hypothetical protein LOC100277214 - 3e-2 At5g36710 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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