CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g02570

Gene name MEE31 (MATERNAL EFFECT EMBRYO ARREST 31)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g02570 820656 MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) Encodes a protein with phosphomannose isomerase activity. S.X. H.G.
0.39 48.4 At1g06510 837162 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BMOFPAV S.X. H.G.
0.36 43.6 At5g49940 835057 NFU2 (NIFU-LIKE PROTEIN 2) Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast. S.X. H.G.
0.35 41.6 At4g09620 826547 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO S.X. H.G.
0.35 41.6 At1g70730 843410 phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative F:intramolecular transferase activity, phosphotransferases, magnesium ion binding, phosphoglucomutase activity;P:response to cadmium ion, carbohydrate metabolic process;C:cytosol, nucleus, plasma membrane;BOMFPA S.X. H.G.
0.35 41.6 At1g69390 843271 ATMINE1 (Arabidopsis homologue of bacterial MinE 1) Encodes an Arabidopsis homologue of the bacterial MinE topological specificity factor ensuring correct division site placement. It is an essential integral component of the plastid division machinery. S.X. H.G.
0.31 33.8 At1g72180 843550 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.29 30.3 At1g50170 841439 ATSIRB (ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B) encodes sirohydrochlorin ferrochelatase catalyzing the last step of the siroheme biosynthesis S.X. H.G.
0.29 30.3 At3g58010 824970 unknown protein F:unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule;PFO S.X. H.G.
0.28 30.3 At1g02560 839433 CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.2 99.7 GSM133052 2795 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
23.7 99.6 E-ATMX-35-raw-cel-1574334832
23.6 99.6 GSM128723 Pieterse_1-9_Prapae-12h_Rep1_ATH1 GSE5525 Transcriptome changes of Arabidopsis during pathogen and insect attack
21.4 99.6 GSM131129 AtGen_B-15_2-1-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
20.0 99.6 GSM133068 2530 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
19.2 99.6 GSM133055 2797 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
19.1 99.6 E-MEXP-449-raw-cel-676423253
18.7 99.5 GSM131135 AtGen_B-21_2-7-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
18.5 99.5 GSM133053 2794 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
17.4 99.5 E-ATMX-35-raw-cel-1574334816
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 7e-4 46 At1g67070 843027 DIN9 (DARK INDUCIBLE 9) Encodes a protein with phosphomannose isomerase activity that is involved in synthesis of ascorbic acid. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. C.G. S.X.
0.01 6e-1 36 At5g58120 835924 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA C.G. S.X.
0.01 6e-1 36 At3g13610 820564 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, dioxygenase activity;P:coumarin biosynthetic process, response to cyclopentenone, hydrogen peroxide-mediated programmed cell death, secondary metabolic process;C:cellular_component unknown;POBFM C.G. S.X.
0.01 6e-1 36 At3g43210 823396 TES (TETRASPORE) Required for cytokinesis in pollen. In mutants, all four microspore nuclei remain within the same cytoplasm after meiosis. C.G. S.X.
0.01 6e-1 36 At1g63740 842678 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
0.01 6e-1 36 At1g63730 842677 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response;C:intrinsic to membrane;PMBOAF C.G. S.X.
0.01 3e+0 34 At5g55670 835661 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOFPVA C.G. S.X.
0.02 3e+0 34 At5g05290 830411 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 6e-2 40 Glycine max GmaAffx.80008.1.S1_at BM886163 - - 2e-2 At3g02570 MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) C.G. S.X.
0.03 1e-3 44 Hordeum vulgare Contig9791_s_at Contig9791 - - 2e-3 At3g02570 MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) C.G. S.X.
0.03 3e-1 38 Oryza sativa Os02g0674466 9630.m04387 - - 1e+1 At2g15327 unknown protein C.G. S.X.
0.28 1e-21 105 Populus trichocarpa PtpAffx.215459.1.S1_at pmrna29668 hypothetical protein - 6e-22 At3g02570 MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.65101.1.A1_at BJ261708 - - 3e-1 At1g61470 CCR4-NOT transcription complex protein, putative C.G. S.X.
0.07 1e-8 59 Vitis vinifera 1612056_at BQ795970 hypothetical protein LOC100263511 - 2e-8 At3g02570 MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) C.G. S.X.
0.06 3e-1 36 Zea mays ZmAffx.1096.1.A1_at AW090847 - - 2e-1 At3g02570 MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
C GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00020 Hexose phosphate pool

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00051 Fructose and mannose metabolism
00520 Amino sugar and nucleotide sugar metabolism
01100 Metabolic pathways
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage