Gene omics information

Query gene ID At3g02550
Gene name LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g02550821112LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)F:unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9597.0At3g10040820165transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVAS.X.H.G.
0.8994.6At4g10270826619wound-responsive family proteinF:molecular_function unknown;P:response to wounding;C:unknown;PS.X.H.G.
0.8994.6At5g39890833986unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.8491.9At1g33055840201unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.8290.9At4g24110828511unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMS.X.H.G.
0.7888.6At5g15120831364unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.7486.1At4g33560829495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.7385.5At5g66985836833unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7184.2At3g27220822341kelch repeat-containing proteinF:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
92.699.9GSM2454872 hr Hypoxia Stress Total RNA Rep 3GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
78.599.9GSM2454672 hr Hypoxia Stress Total RNA Rep 1GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
72.699.9GSM2454722 hr Hypoxia Stress IP RNA Rep 1GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
71.099.9GSM2454772 hr Hypoxia Stress Total RNA Rep 2GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
68.599.9GSM2454749 hr Hypoxia Stress IP RNA Rep 1GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
62.099.8GSM2454922 hr Hypoxia Stress IP RNA Rep 3GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
59.599.8GSM2454799 hr Hypoxia Stress Total RNA Rep 2GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
57.899.8GSM2454822 hr Hypoxia Stress IP RNA Rep 2GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
57.499.8GSM2454849 hr Hypoxia Stress IP RNA Rep 2GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
56.899.8GSM2454899 hr Hypoxia Stress Total RNA Rep 3GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.284e-35149At1g67100843030LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)F:unknown;P:response to gibberellin stimulus;C:unknown;PC.G.S.X.
0.096e-342At3g49940824156LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)F:unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.053e-240At4g37540829909LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)F:unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.024e-136At5g52500835326unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.024e-136At1g05810837091RABA5E (RAB GTPASE HOMOLOG A5E)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:chloroplast;MOFPBVAC.G.S.X.
0.012e+034At1g67720843097leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein kinase activity, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.022e+034At1g60060842300unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFMBC.G.S.X.
0.022e+034At1g70560843393TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1)TAA1 is involved in the shade-induced production of indole-3-pyruvate (IPA), a precursor to IAA, a biologically active auxin. It is also involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. This enzyme can catalyze the formation of IPA from L-tryptophan. Though L-Trp is expected to be the preferred substrate in vivo, TAA1 also acts as an aminotransferase using L-Phe, L-Tyr, L-Leu, L-Ala, L-Met, and L-Gln.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.215e-23109Glycine maxGmaAffx.85652.2.S1_atBM307988--4e-18At1g67100LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)C.G.S.X.
0.031e+130Hordeum vulgarerbaal1j08_s_atrbaal1j08--5e+0At3g02550LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)C.G.S.X.
0.075e-859Oryza sativaOs01g01296009629.m00304-Protein of unknown function DUF260 domaincontaining protein3e-14At1g67100LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)C.G.S.X.
0.373e-21103Populus trichocarpaPtpAffx.203919.1.S1_atpmrna7735hypothetical protein-3e-32At1g67100LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)C.G.S.X.
0.051e-448Triticum aestivumTa.7384.2.S1_a_atCA635814--7e-5At3g02550LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)C.G.S.X.
0.083e-1167Vitis vinifera1621210_atCB979564hypothetical protein LOC100254184-2e-9At1g68510LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42)C.G.S.X.
0.033e+032Zea maysZmAffx.995.1.S1_atAI855362Sister of ramosa 3-2e-6At1g22210trehalose-6-phosphate phosphatase, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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