CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g02550

Gene name LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g02550 821112 LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) F:unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.95 97.0 At3g10040 820165 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA S.X. H.G.
0.89 94.6 At4g10270 826619 wound-responsive family protein F:molecular_function unknown;P:response to wounding;C:unknown;P S.X. H.G.
0.89 94.6 At5g39890 833986 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.84 91.9 At1g33055 840201 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.82 90.9 At4g24110 828511 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.78 88.6 At5g15120 831364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.74 86.1 At4g33560 829495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.73 85.5 At5g66985 836833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.71 84.2 At3g27220 822341 kelch repeat-containing protein F:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
92.6 99.9 GSM245487 2 hr Hypoxia Stress Total RNA Rep 3 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
78.5 99.9 GSM245467 2 hr Hypoxia Stress Total RNA Rep 1 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
72.6 99.9 GSM245472 2 hr Hypoxia Stress IP RNA Rep 1 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
71.0 99.9 GSM245477 2 hr Hypoxia Stress Total RNA Rep 2 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
68.5 99.9 GSM245474 9 hr Hypoxia Stress IP RNA Rep 1 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
62.0 99.8 GSM245492 2 hr Hypoxia Stress IP RNA Rep 3 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
59.5 99.8 GSM245479 9 hr Hypoxia Stress Total RNA Rep 2 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
57.8 99.8 GSM245482 2 hr Hypoxia Stress IP RNA Rep 2 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
57.4 99.8 GSM245484 9 hr Hypoxia Stress IP RNA Rep 2 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
56.8 99.8 GSM245489 9 hr Hypoxia Stress Total RNA Rep 3 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.28 4e-35 149 At1g67100 843030 LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40) F:unknown;P:response to gibberellin stimulus;C:unknown;P C.G. S.X.
0.09 6e-3 42 At3g49940 824156 LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38) F:unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.05 3e-2 40 At4g37540 829909 LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39) F:unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 4e-1 36 At5g52500 835326 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 4e-1 36 At1g05810 837091 RABA5E (RAB GTPASE HOMOLOG A5E) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:chloroplast;MOFPBVA C.G. S.X.
0.01 2e+0 34 At1g67720 843097 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein kinase activity, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.02 2e+0 34 At1g60060 842300 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFMB C.G. S.X.
0.02 2e+0 34 At1g70560 843393 TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1) TAA1 is involved in the shade-induced production of indole-3-pyruvate (IPA), a precursor to IAA, a biologically active auxin. It is also involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. This enzyme can catalyze the formation of IPA from L-tryptophan. Though L-Trp is expected to be the preferred substrate in vivo, TAA1 also acts as an aminotransferase using L-Phe, L-Tyr, L-Leu, L-Ala, L-Met, and L-Gln. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 5e-23 109 Glycine max GmaAffx.85652.2.S1_at BM307988 - - 4e-18 At1g67100 LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40) C.G. S.X.
0.03 1e+1 30 Hordeum vulgare rbaal1j08_s_at rbaal1j08 - - 5e+0 At3g02550 LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) C.G. S.X.
0.07 5e-8 59 Oryza sativa Os01g0129600 9629.m00304 - Protein of unknown function DUF260 domaincontaining protein 3e-14 At1g67100 LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40) C.G. S.X.
0.37 3e-21 103 Populus trichocarpa PtpAffx.203919.1.S1_at pmrna7735 hypothetical protein - 3e-32 At1g67100 LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40) C.G. S.X.
0.05 1e-4 48 Triticum aestivum Ta.7384.2.S1_a_at CA635814 - - 7e-5 At3g02550 LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) C.G. S.X.
0.08 3e-11 67 Vitis vinifera 1621210_at CB979564 hypothetical protein LOC100254184 - 2e-9 At1g68510 LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42) C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.995.1.S1_at AI855362 Sister of ramosa 3 - 2e-6 At1g22210 trehalose-6-phosphate phosphatase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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