CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g02380

Gene name COL2 (constans-like 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g02380 821298 COL2 (constans-like 2) homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins S.X. H.G.
0.89 94.6 At2g31380 817696 STH a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction. S.X. H.G.
0.89 94.6 At5g15850 831442 COL1 (constans-like 1) Homologous to the flowering-time gene CONSTANS. S.X. H.G.
0.67 81.6 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. S.X. H.G.
0.55 70.6 At1g64500 842758 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
100.7 99.9 E-MEXP-1304-raw-cel-1530619115
98.2 99.9 E-MEXP-1304-raw-cel-1530618514
84.9 99.9 E-MEXP-1304-raw-cel-1530618308
74.9 99.9 GSM142814 SS002_ATH1_A6-smith-12h GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
74.3 99.9 GSM253157 2h into an extended night GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
61.8 99.8 GSM77055 00h Col-0 replicate A GSE3416 Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
53.8 99.8 GSM142803 SS001_ATH1_A6-Smith-8-45 GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
51.6 99.8 GSM77056 00h Col-0 replicate B GSE3416 Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
45.5 99.8 GSM253155 end of the night B GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
42.5 99.8 E-MEXP-1299-raw-cel-1519901564
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.38 1e-47 190 At5g15850 831442 COL1 (constans-like 1) Homologous to the flowering-time gene CONSTANS. C.G. S.X.
0.45 1e-44 180 At5g15840 831441 CO (CONSTANS) Encodes a protein showing similarities to zinc finger transcription factors, involved in regulation of flowering under long days. Acts upstream of FT and SOC1. C.G. S.X.
0.05 1e-7 57 At5g24930 832563 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular, chloroplast;POM C.G. S.X.
0.04 8e-3 42 At5g57660 835872 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO C.G. S.X.
0.02 3e-2 40 At1g25440 839130 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:membrane;POB C.G. S.X.
0.01 3e-2 40 At1g72120 843543 transporter F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF C.G. S.X.
0.02 1e-1 38 At4g34160 829564 CYCD3 encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1. C.G. S.X.
0.01 5e-1 36 At4g28600 828978 NPGR2 (no pollen germination related 2) encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max GmaAffx.1526.1.S1_at BM526462 - - 8e-1 At5g27990 unknown protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig13496_at Contig13496 - - 5e-3 At1g12710 AtPP2-A12 (Phloem protein 2-A12) C.G. S.X.
0.09 7e-11 69 Oryza sativa Os06g0275000 AB041838.1 - Hd1 6e-11 At3g02380 COL2 (constans-like 2) C.G. S.X.
0.24 3e-28 127 Populus trichocarpa Ptp.1032.1.S1_at AY515151.1 hypothetical protein - 1e-24 At5g15850 COL1 (constans-like 1) C.G. S.X.
0.09 9e-6 52 Triticum aestivum Ta.28785.1.S1_at AB094491.1 Hd1-like protein /// Hd1-like protein - 1e-5 At3g02380 COL2 (constans-like 2) C.G. S.X.
0.15 1e-38 159 Vitis vinifera 1609874_at CF514134 hypothetical protein LOC100248114 - 4e-38 At3g02380 COL2 (constans-like 2) C.G. S.X.
0.06 2e-8 59 Zea mays Zm.1410.1.S1_at AY105193.1 hypothetical protein LOC100272264 - 5e-10 At5g15840 CO (CONSTANS) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009909 Any process that modulates the frequency, rate or extent of flower development.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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