Gene omics information

Query gene ID At3g02380
Gene name COL2 (constans-like 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g02380821298COL2 (constans-like 2)homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteinsS.X.H.G.
0.8994.6At2g31380817696STHa B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.S.X.H.G.
0.8994.6At5g15850831442COL1 (constans-like 1)Homologous to the flowering-time gene CONSTANS.S.X.H.G.
0.6781.6At2g46830819296CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.S.X.H.G.
0.5570.6At1g64500842758glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
100.799.9E-MEXP-1304-raw-cel-1530619115
98.299.9E-MEXP-1304-raw-cel-1530618514
84.999.9E-MEXP-1304-raw-cel-1530618308
74.999.9GSM142814SS002_ATH1_A6-smith-12hGSE6174Gene expression and carbohydrate metabolism through the diurnal cycle
74.399.9GSM2531572h into an extended nightGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
61.899.8GSM7705500h Col-0 replicate AGSE3416Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
53.899.8GSM142803SS001_ATH1_A6-Smith-8-45GSE6174Gene expression and carbohydrate metabolism through the diurnal cycle
51.699.8GSM7705600h Col-0 replicate BGSE3416Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
45.599.8GSM253155end of the night BGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
42.599.8E-MEXP-1299-raw-cel-1519901564
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.381e-47190At5g15850831442COL1 (constans-like 1)Homologous to the flowering-time gene CONSTANS.C.G.S.X.
0.451e-44180At5g15840831441CO (CONSTANS)Encodes a protein showing similarities to zinc finger transcription factors, involved in regulation of flowering under long days. Acts upstream of FT and SOC1.C.G.S.X.
0.051e-757At5g24930832563zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular, chloroplast;POMC.G.S.X.
0.048e-342At5g57660835872zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POC.G.S.X.
0.023e-240At1g25440839130zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:membrane;POBC.G.S.X.
0.013e-240At1g72120843543transporterF:transporter activity;P:oligopeptide transport;C:membrane;BPOMFC.G.S.X.
0.021e-138At4g34160829564CYCD3encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1.C.G.S.X.
0.015e-136At4g28600828978NPGR2 (no pollen germination related 2)encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-138Glycine maxGmaAffx.1526.1.S1_atBM526462--8e-1At5g27990unknown proteinC.G.S.X.
0.021e+034Hordeum vulgareContig13496_atContig13496--5e-3At1g12710AtPP2-A12 (Phloem protein 2-A12)C.G.S.X.
0.097e-1169Oryza sativaOs06g0275000AB041838.1-Hd16e-11At3g02380COL2 (constans-like 2)C.G.S.X.
0.243e-28127Populus trichocarpaPtp.1032.1.S1_atAY515151.1hypothetical protein-1e-24At5g15850COL1 (constans-like 1)C.G.S.X.
0.099e-652Triticum aestivumTa.28785.1.S1_atAB094491.1Hd1-like protein /// Hd1-like protein-1e-5At3g02380COL2 (constans-like 2)C.G.S.X.
0.151e-38159Vitis vinifera1609874_atCF514134hypothetical protein LOC100248114-4e-38At3g02380COL2 (constans-like 2)C.G.S.X.
0.062e-859Zea maysZm.1410.1.S1_atAY105193.1hypothetical protein LOC100272264-5e-10At5g15840CO (CONSTANS)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009909Any process that modulates the frequency, rate or extent of flower development.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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