Gene omics information

Query gene ID At3g02340
Gene name zinc finger (C3HC4-type RING finger) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At3g02340821090zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVABS.X.H.G.
0.3338.1At2g33390817903unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.092.8At3g12570820437FYDF:unknown;P:unknown;C:chloroplast envelope;PS.X.H.G.
0.030.6At2g17990816311-F:unknown;P:unknown;C:cellular_component unknown;MOBFPAVS.X.H.G.
0.020.4At1g28490839749SYP61 (SYNTAXIN OF PLANTS 61)Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
61.099.8GSM311296Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
51.099.8GSM25316548h into an extended nightBGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
48.699.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
45.899.8GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
44.399.8GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
41.799.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
40.399.8GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
37.299.7GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
35.199.7GSM284386Arabidopsis GSUS3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
34.799.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.241e-48194At5g15820831439zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBC.G.S.X.
0.021e-242At2g45010819109unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMOC.G.S.X.
0.021e-242At1g80130844353bindingF:binding;P:response to oxidative stress;C:membrane;BPOMFAVC.G.S.X.
0.024e-240At5g56950835797NAP1Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes.C.G.S.X.
0.024e-240At4g02800828171unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVAC.G.S.X.
0.014e-240At3g48170823972ALDH10A9Arabidopsis thaliana putative betaine aldehyde dehydrogenaseC.G.S.X.
0.014e-240At2g34380818001-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOC.G.S.X.
0.012e-138At4g16650827366unknown proteinF:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.036e-240Glycine maxGma.44.1.S1_atL38856.1nucleosome assembly protein 1-3e-68At5g56950NAP1C.G.S.X.
0.027e-238Hordeum vulgareContig3792_atContig3792--2e-2At2g20820unknown proteinC.G.S.X.
0.033e-138Oryza sativaOsAffx.28718.1.S1_at---0C.G.S.X.
0.062e-757Populus trichocarpaPtpAffx.212654.1.S1_atpmrna24762hypothetical protein-3e-12At5g60820zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.022e-138Triticum aestivumTaAffx.31101.1.S1_atCA619504--1e+1At1g51960IQD27 (IQ-domain 27)C.G.S.X.
0.052e-1065Vitis vinifera1606558_atBQ795963hypothetical protein LOC100248083-5e-3At5g15820zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.043e-136Zea maysZmAffx.783.1.A1_s_atAI745854nucleolin-8e-7At1g51730RWD domain-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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