CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g02320

Gene name RNA binding / tRNA (guanine-N2-)-methyltransferase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g02320 820451 RNA binding / tRNA (guanine-N2-)-methyltransferase F:RNA binding, tRNA (guanine-N2-)-methyltransferase activity;P:tRNA processing;C:cellular_component unknown;OMAFBP S.X. H.G.
0.48 62.5 At5g52820 835359 WD-40 repeat family protein / notchless protein, putative F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBAV S.X. H.G.
0.47 61.2 At5g39840 833980 ATP-dependent RNA helicase, mitochondrial, putative F:helicase activity, ATP-dependent RNA helicase activity, nucleic acid binding, ATP binding;P:biological_process unknown;C:mitochondrion;OBFMPAV S.X. H.G.
0.45 58.3 At5g22330 832293 RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) F:protein binding;P:defense response to fungus, incompatible interaction, meristem development;C:nucleolus, nucleus, chloroplast;BOMFAP S.X. H.G.
0.44 57.2 At4g29510 829072 PRMT11 (ARGININE METHYLTRANSFERASE 11) Has arginine N-methyltransferase activity. Modifies AtMBD7. S.X. H.G.
0.44 57.2 At3g62940 825469 OTU-like cysteine protease family protein F:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;OMFBPVA S.X. H.G.
0.44 57.2 At4g19610 827703 RNA binding / nucleic acid binding / nucleotide binding F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:nucleolus;MPFOBAV S.X. H.G.
0.43 55.3 At1g52160 841647 TRZ3 (TRNASE Z 3) Encodes a tRNase Z. S.X. H.G.
0.43 55.3 At5g61770 836299 PPAN (PETER PAN-LIKE PROTEIN) F:unknown;P:unknown;C:cellular_component unknown;MOFPVB S.X. H.G.
0.43 55.3 At3g49990 824161 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
160.9 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
127.2 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
109.5 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
52.9 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
46.4 99.8 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
44.8 99.8 E-MEXP-509-raw-cel-829148348
37.6 99.7 E-MEXP-509-raw-cel-829148420
34.3 99.7 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.0 99.7 E-MEXP-509-raw-cel-829148201
24.0 99.6 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.69 0 1146 At5g15810 831438 N2,N2-dimethylguanosine tRNA methyltransferase family protein F:RNA binding, tRNA (guanine-N2-)-methyltransferase activity;P:tRNA processing;C:cellular_component unknown;OMAFBP C.G. S.X.
0.01 1e-2 42 At1g68710 843201 haloacid dehalogenase-like hydrolase family protein F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:mitochondrion, integral to membrane, membrane;MBOFPAV C.G. S.X.
0.01 1e-2 42 At1g27200 839609 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOFM C.G. S.X.
0.01 6e-2 40 At5g50970 835170 WD-40 repeat family protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MOBFP C.G. S.X.
0.02 6e-2 40 At3g16280 820874 DNA binding / transcription factor encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.01 2e-1 38 At5g47090 834755 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA C.G. S.X.
0.01 2e-1 38 At5g11390 831010 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.01 2e-1 38 At4g30250 829148 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:endomembrane system;BOMFPAV C.G. S.X.
0.02 2e-1 38 At4g36060 829762 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast, cytoplasm;PMOBF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 6e-12 73 Glycine max Gma.15611.1.S1_at CD411158 - - 2e-25 At5g15810 N2,N2-dimethylguanosine tRNA methyltransferase family protein C.G. S.X.
0.03 3e-5 50 Hordeum vulgare Contig13058_s_at Contig13058 - - 3e-1 At1g72170 unknown protein C.G. S.X.
0.23 6e-25 117 Oryza sativa Os03g0786700 AK067936.1 - N2,N2-dimethylguanosine tRNA methyltransferasefamily protein 4e-25 At3g02320 RNA binding / tRNA (guanine-N2-)-methyltransferase C.G. S.X.
0.28 2e-42 174 Populus trichocarpa Ptp.4262.1.S1_at CV230272 hypothetical protein - 1e-42 At3g02320 RNA binding / tRNA (guanine-N2-)-methyltransferase C.G. S.X.
0.10 1e-12 75 Triticum aestivum Ta.7092.3.S1_at BJ315022 - - 2e-16 At5g15810 N2,N2-dimethylguanosine tRNA methyltransferase family protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1620820_at CK138181.1 - - 3e-1 At5g28610 - C.G. S.X.
0.19 5e-16 85 Zea mays Zm.6116.1.A1_at CK347339 - - 9e-16 At3g02320 RNA binding / tRNA (guanine-N2-)-methyltransferase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0008033 The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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