CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g02210

Gene name COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At3g02210 821245 COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.56 73.0 At4g37750 829931 ANT (AINTEGUMENTA) ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia. S.X. H.G.
0.47 61.2 At5g07180 830609 ERL2 (ERECTA-LIKE 2) Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments. S.X. H.G.
0.46 59.8 At2g26330 817173 ER (ERECTA) Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. S.X. H.G.
0.46 59.8 At2g43800 818984 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MPFOBVA S.X. H.G.
0.41 52.4 At3g17680 821035 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF S.X. H.G.
0.38 46.7 At3g61310 825303 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB S.X. H.G.
0.33 38.1 At2g28790 817428 osmotin-like protein, putative F:molecular_function unknown;P:response to other organism;C:plant-type cell wall;PFMBO S.X. H.G.
0.29 30.3 At3g05470 819712 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:endomembrane system;MPOFVBA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
101.8 99.9 GSM242960 Steroid day 3 (day3D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
88.0 99.9 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
71.6 99.9 GSM242956 Steroid day 1 (day1D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
69.6 99.9 GSM242955 Steroid day 1 (day1D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
59.8 99.8 E-MEXP-682-raw-cel-922397560
57.4 99.8 GSM242954 Mock day 1 (day1E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
51.1 99.8 GSM242957 Mock day 3 (day3E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
48.7 99.8 GSM242958 Mock day 3 (day3E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
48.1 99.8 GSM242959 Steroid day 3 (day3D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
45.9 99.8 E-MEXP-682-raw-cel-922397577
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.39 2e-19 97 At3g29810 822697 COBL2 (COBRA-LIKE PROTEIN 2 PRECURSOR) F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P C.G. S.X.
0.21 1e-11 71 At5g60920 836213 COB (COBRA) Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions. C.G. S.X.
0.18 8e-10 65 At5g15630 831417 IRX6 Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars. C.G. S.X.
0.03 7e-4 46 At1g09790 837508 COBL6 (COBRA-LIKE PROTEIN 6 PRECURSOR) F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P C.G. S.X.
0.03 1e-2 42 At5g60950 836216 COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR) F:unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.03 2e-1 38 At4g04745 825810 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 2e-1 38 At1g20330 838621 SMT2 (STEROL METHYLTRANSFERASE 2) Encodes a sterol-C24-methyltransferases involved in sterol biosynthesis. Mutants display altered sterol composition, serrated petals and sepals and altered cotyledon vascular patterning as well as ectopic endoreduplication. This suggests that suppression of endoreduplication is important for petal morphogenesis and that normal sterol composition is required for this suppression. C.G. S.X.
0.02 7e-1 36 At2g28690 817418 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 3e-13 77 Glycine max Gma.5605.1.S1_at CD405703 - - 2e-13 At3g02210 COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR) C.G. S.X.
0.13 4e-16 85 Hordeum vulgare rbah36c02_s_at rbah36c02 - - 2e-11 At5g60920 COB (COBRA) C.G. S.X.
0.18 2e-21 105 Oryza sativa Os.16627.1.S1_at - - - 0 C.G. S.X.
0.15 7e-14 79 Populus trichocarpa Ptp.5790.1.S1_s_at CV253882 hypothetical protein - 8e-57 At5g60920 COB (COBRA) C.G. S.X.
0.14 9e-16 85 Triticum aestivum TaAffx.143995.13.S1_at AY188332 - - 5e-11 At5g60920 COB (COBRA) C.G. S.X.
0.32 3e-37 155 Vitis vinifera 1621414_at CB971931 hypothetical protein LOC100263436 - 1e-36 At3g02210 COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR) C.G. S.X.
0.16 1e-12 73 Zea mays Zm.477.1.A2_a_at AY109348.1 brittle stalk-2-like protein 3 - 1e-15 At5g60920 COB (COBRA) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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