Gene omics information

Query gene ID At3g02180
Gene name SP1L3 (SPIRAL 1-LIKE3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g02180821277SP1L3 (SPIRAL 1-LIKE3)SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.S.X.H.G.
0.3133.8At2g03680814896SPR1 (SPIRAL1)The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle.S.X.H.G.
0.2930.3At1g78040844139pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:in 10 processes;C:endomembrane system;PS.X.H.G.
0.2930.3At5g10560830921glycosyl hydrolase family 3 proteinF:xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:plasma membrane, vacuole;BOFPAMS.X.H.G.
0.2930.3At5g48810834939CB5-D (CYTOCHROME B5 ISOFORM D)Encodes a cytochrome b5 isoform that localizes to the ER. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro and the protein appears to be subject to glycosylation.S.X.H.G.
0.2319.3At3g12290820409tetrahydrofolate dehydrogenase/cyclohydrolase, putativeF:binding, catalytic activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;OBMFPAS.X.H.G.
0.2115.8At1g14140837973mitochondrial substrate carrier family proteinF:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOVS.X.H.G.
0.1912.7At4g18060827531clathrin bindingF:clathrin binding;P:unknown;C:unknown;MOFPBS.X.H.G.
0.1710.2At4g38040829960exostosin family proteinF:catalytic activity;P:biological_process unknown;C:chloroplast, membrane;PMOBFVS.X.H.G.
0.168.8At1g42960840894-expressed protein localized to the inner membrane of the chloroplast.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
49.499.8GSM133775Lindsey_1-27_torpedo-meristem_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.199.4GSM133765Lindsey_1-17_torpedo-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.299.2GSM134513Col-0_4day_dark_-lincomycin_rep1GSE5759red illumination w/o lincomycin
9.199.1GSM226546Slice4JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
7.098.7GSM2454712 hr Non-Stress IP RNA Rep 1GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
6.898.7GSM128787Somerville_1-10_stem-GH7_Rep1_ATH1GSE5533Tissue Type Arrays of Columbia-0
6.798.7GSM2454912 hr Non-Stress IP RNA Rep 3GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
6.398.6GSM133770Lindsey_1-22_torpedo-apical_Rep4_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
5.998.5GSM2454922 hr Hypoxia Stress IP RNA Rep 3GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
5.898.4GSM2454939 hr Non-Stress IP RNA Rep 3GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.391e-27123At5g15600831412SP1L4 (SPIRAL1-LIKE4)SPIRAL1-LIKE4 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.C.G.S.X.
0.235e-548At1g263556240366SP1L1 (SPIRAL1-LIKE1)SPIRAL1-LIKE1 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. GUS expression was detected only in pollen; however, no endogenous transcript was found.C.G.S.X.
0.053e-342At5g06200830507integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.024e-238At4g32285829362epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:cytosol, nucleus, plasma membrane;MPBFOVAC.G.S.X.
0.162e-136At1g69230843254SP1L2 (SPIRAL1-LIKE2)SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.114e-961Glycine maxGmaAffx.88740.1.S1_s_atCK605984--2e-9At1g26355SP1L1 (SPIRAL1-LIKE1)C.G.S.X.
0.041e+032Hordeum vulgareContig18605_atContig18605--2e-5At2g20900diacylglycerol kinase, putativeC.G.S.X.
0.099e-238Oryza sativaOs03g0417800AK121654.1-Nitrilase associated protein-like1e-4At1g26355SP1L1 (SPIRAL1-LIKE1)C.G.S.X.
0.151e-963Populus trichocarpaPtpAffx.5746.4.S1_s_atCV225347--9e-10At3g02180SP1L3 (SPIRAL 1-LIKE3)C.G.S.X.
0.067e-134Triticum aestivumTa.4755.1.S1_s_atBJ271046--5e-2At4g10595LCR2 (Low-molecular-weight cysteine-rich 2)C.G.S.X.
0.132e-754Vitis vinifera1618440_s_atCD801284hypothetical protein LOC100256565-2e-2At5g15600SP1L4 (SPIRAL1-LIKE4)C.G.S.X.
0.123e-444Zea maysZm.3315.1.A1_atAY107581.1nitrilase-associated protein-2e-3At3g02180SP1L3 (SPIRAL 1-LIKE3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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