CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g02170

Gene name LNG2 (LONGIFOLIA2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At3g02170 821279 LNG2 (LONGIFOLIA2) Encodes LONGIFOLIA2 (LNG2). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG2 homologue LNG1 (At5g15580) has similar function. S.X. H.G.
0.33 38.1 At3g07010 819886 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO S.X. H.G.
0.25 22.6 At4g23820 828482 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA S.X. H.G.
0.22 17.5 At3g20820 821630 leucine-rich repeat family protein F:protein binding;P:signal transduction, defense response;C:apoplast, cell wall, chloroplast, membrane;PMOBFA S.X. H.G.
0.20 14.4 At1g33240 840218 AT-GTL1 (GT2-LIKE 1) Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone. S.X. H.G.
0.18 11.4 At3g16850 820938 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:vacuole, plant-type cell wall;PBFOMA S.X. H.G.
0.14 6.8 At3g01690 821094 - F:unknown;P:unknown;C:unknown;OBMPFVA S.X. H.G.
0.13 5.8 At1g18620 838443 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV S.X. H.G.
0.12 4.9 At2g26910 817232 PDR4 (PLEIOTROPIC DRUG RESISTANCE 4) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMFAPV S.X. H.G.
0.11 4.1 At3g04910 819651 WNK1 (WITH NO LYSINE (K) 1) Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.4 99.6 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
23.1 99.6 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
23.0 99.6 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
22.1 99.6 GSM226272 phyAphyB_Dark_replicate3 GSE8951 A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
21.7 99.6 GSM131607 ATGE_42_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
21.2 99.6 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
20.9 99.6 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
20.4 99.6 E-MEXP-265-raw-cel-414619001
20.3 99.6 GSM133253 RIKEN-GODA11A-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
18.0 99.5 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.36 2e-33 145 At5g15580 831411 LNG1 (LONGIFOLIA1) Encodes LONGIFOLIA1 (LNG1). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG1 homologue LNG2 (At3g02170) has similar function. C.G. S.X.
0.05 2e-30 135 At5g15581 6241099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 6e-3 44 At1g18620 838443 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV C.G. S.X.
0.01 9e-2 40 At3g27190 822338 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative F:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:unknown;BOMPFAV C.G. S.X.
0.01 3e-1 38 At5g65687 836697 transporter-related F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:biological_process unknown;C:plasma membrane, membrane;BFOMAP C.G. S.X.
0.01 3e-1 38 At3g08640 820011 alphavirus core protein family F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, chloroplast, plastid, chloroplast envelope;MBPOFVA C.G. S.X.
0.01 1e+0 36 At4g16630 827364 DEAD/DEAH box helicase, putative (RH28) F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;MBOFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 40 Glycine max GmaAffx.64396.1.S1_at BU926459 - - 8e-1 At4g35590 RWP-RK domain-containing protein C.G. S.X.
0.01 3e+0 34 Hordeum vulgare Contig25604_at Contig25604 - - 2e+0 At3g58130 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related C.G. S.X.
0.01 2e-1 40 Oryza sativa Os03g0603600 AK071836.1 - Glycerophosphoryl diester phosphodiesterase familyprotein 2e-4 At5g08030 glycerophosphoryl diester phosphodiesterase family protein C.G. S.X.
0.04 5e-10 67 Populus trichocarpa PtpAffx.214003.1.S1_at pmrna27278 hypothetical protein - 5e-10 At3g02170 LNG2 (LONGIFOLIA2) C.G. S.X.
0.01 4e-1 38 Triticum aestivum Ta.6862.2.S1_x_at CA639828 - - 1e+0 At1g80290 glycosyltransferase family protein 47 C.G. S.X.
0.02 4e-4 46 Vitis vinifera 1613019_at CD718307 hypothetical protein LOC100266999 - 5e+0 At5g66060 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors C.G. S.X.
0.01 2e+0 34 Zea mays Zm.9203.1.A1_at BM267305 retrotransposon protein - 1e+0 At1g48010 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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