Gene omics information

Query gene ID At3g02040
Gene name SRG3 (senescence-related gene 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g02040821175SRG3 (senescence-related gene 3)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAVS.X.H.G.
0.9496.7At1g08310837351esterase/lipase/thioesterase family proteinF:catalytic activity;P:biological_process unknown;C:unknown;BPOMFAS.X.H.G.
0.9095.1At1g73010843632phosphataseF:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBFS.X.H.G.
0.9095.1At5g20150832137SPX1 (SPX DOMAIN GENE 1)F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBAS.X.H.G.
0.9095.1At5g20790832202unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.8693.1At2g11810815657MGDCMGD3 is the major enzyme for galactolipid metabolism during phosphate starvation. Does not contribute to galactolipid synthesis under P1-sufficient conditions.S.X.H.G.
0.8693.1At2g45130819120SPX3 (SPX DOMAIN GENE 3)F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:cellular_component unknown;FMPOS.X.H.G.
0.8290.9At1g17710838347phosphataseF:phosphatase activity;P:metabolic process;C:unknown;MPOBFS.X.H.G.
0.7586.9At1g19200838503senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7184.2At3g05630819730PLDP2Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
132.999.9E-MEXP-1797-raw-cel-1669768039
117.299.9E-MEXP-1797-raw-cel-1669767949
114.099.9GSM2454949 hr Hypoxia Stress IP RNA Rep 3GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
106.699.9GSM2454749 hr Hypoxia Stress IP RNA Rep 1GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
101.799.9E-MEXP-1797-raw-cel-1669767976
100.499.9GSM2454849 hr Hypoxia Stress IP RNA Rep 2GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
96.299.9GSM2454899 hr Hypoxia Stress Total RNA Rep 3GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
94.199.9E-MEXP-1797-raw-cel-1669768012
89.799.9E-MEXP-1797-raw-cel-1669767940
88.899.9E-MEXP-791-raw-cel-1122937569
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-138At4g008935008108-F:unknown;P:unknown;C:chloroplast;PC.G.S.X.
0.021e-138At4g00040828224chalcone and stilbene synthase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, biosynthetic process, metabolic process;C:unknown;PBOFC.G.S.X.
0.055e-136At5g41080834110glycerophosphoryl diester phosphodiesterase family proteinF:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BOMFPAVC.G.S.X.
0.015e-136At3g56410824808unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVAC.G.S.X.
0.025e-136At1g68310843160vacuolar sorting signal bindingEncodes a protein that has been shown to specifically interact with a sequence motif, PIEPPPHH, in the cytoplasmic tail of a membrane protein that directs the protein from the ER to vacuoles where it is internalized.C.G.S.X.
0.022e+034At5g20630832185GER3 (GERMIN 3)Encodes a germin-like protein. Its transcripts are more abundant in RNA from leaves collected in the evening, suggesting some kind of circadian regulation.C.G.S.X.
0.022e+034At5g11260830996HY5 (ELONGATED HYPOCOTYL 5)Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.082e-448Glycine maxGma.6211.1.S1_atBU089706--1e-4At3g02040SRG3 (senescence-related gene 3)C.G.S.X.
0.037e-238Hordeum vulgareContig8049_atContig8049--2e-1At3g02040SRG3 (senescence-related gene 3)C.G.S.X.
0.054e-344Oryza sativaOs08g05357009636.m04310-Glycerophosphoryl diester phosphodiesterase familyprotein2e-3At3g02040SRG3 (senescence-related gene 3)C.G.S.X.
0.155e-240Populus trichocarpaPtp.5037.1.S1_s_atBI126545hypothetical protein-3e-2At3g02040SRG3 (senescence-related gene 3)C.G.S.X.
0.046e-136Triticum aestivumTa.6770.1.S1_s_atBQ168403--4e-1At3g02040SRG3 (senescence-related gene 3)C.G.S.X.
0.131e-1479Vitis vinifera1621688_atCF415096hypothetical protein LOC100261754-8e-10At5g41080glycerophosphoryl diester phosphodiesterase family proteinC.G.S.X.
0.104e-342Zea maysZm.13162.1.A1_atCO521967--9e-3At3g02040SRG3 (senescence-related gene 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006071The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
LGO:0006629The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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