Gene omics information

Query gene ID At3g01980
Gene name short-chain dehydrogenase/reductase (SDR) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6378.1At3g01980821069short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome;BOFMPAS.X.H.G.
0.9195.6At1g61680842465TPS14 (TERPENE SYNTHASE 14)F:S-linalool synthase activity;P:monoterpene biosynthetic process;C:plastid;POS.X.H.G.
0.9195.6At2g24210816955TPS10 (terpene synthase 10)F:myrcene synthase activity, (E)-beta-ocimene synthase activity;P:response to jasmonic acid stimulus, monoterpenoid biosynthetic process, response to wounding;C:unknown;POS.X.H.G.
0.9095.1At1g35310840420MLP168 (MLP-LIKE PROTEIN 168)F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PS.X.H.G.
0.8290.9At1g66120842926acyl-activating enzyme 11 (AAE11)F:catalytic activity;P:metabolic process;C:unknown;BOMFPAVS.X.H.G.
0.8089.8At2g45580819166CYP76C3member of CYP76CS.X.H.G.
0.7888.6At3g01530821113AtMYB57 (myb domain protein 57)Member of the R2R3 factor gene family.S.X.H.G.
0.7888.6At4g39480830103CYP96A9 (CYTOCHROME P450 96 A9)member of CYP96AS.X.H.G.
0.7586.9At3g55290824695short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome;BOMFPAVS.X.H.G.
0.7486.1At1g70720843409invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
376.4100.0GSM131609ATGE_43_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
337.9100.0GSM131610ATGE_43_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
326.2100.0GSM131606ATGE_42_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
299.0100.0GSM131607ATGE_42_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
281.1100.0GSM131611ATGE_43_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
251.1100.0GSM131608ATGE_42_DGSE5632AtGenExpress: Developmental series (flowers and pollen)
115.399.9GSM239254CaMV::DME stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
115.399.9GSM131588ATGE_35_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
108.299.9GSM131590ATGE_35_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
107.899.9GSM131589ATGE_35_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.014e-136At1g75010843839ARC3 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3)Encodes ARC3 (Accumulation and Replication of Chloroplast 3), a chloroplast division factor functioning in the initiation of chloroplast division. ARC3 is a chimera of the prokaryotic FtsZ and part of the eukaryotic phosphatidylinositol-4-phosphate 5-kinase (PIP5K). Located on the outer surface of the chloroplast in a ring-like structure at the early stage of chloroplast division. The arc3 mutant has a small number of abnormally large chloroplasts in the cell.C.G.S.X.
0.022e+034At4g26510828757ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferaseF:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAVC.G.S.X.
0.032e+034At1g48600841281phosphoethanolamine N-methyltransferase 2, putative (NMT2)F:methyltransferase activity, phosphoethanolamine N-methyltransferase activity;P:metabolic process;C:unknown;BOFAPMVC.G.S.X.
0.016e+032At5g15170831369tyrosyl-DNA phosphodiesterase-relatedF:phosphoric diester hydrolase activity;P:DNA repair;C:nucleus;MFOPC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.046e-136Glycine maxGmaAffx.22584.1.S1_atBG652004--1e-3At4g03160-C.G.S.X.
0.048e-134Hordeum vulgareContig14425_atContig14425--2e+0At5g45710RHA1 (ROOT HANDEDNESS 1)C.G.S.X.
0.043e+034Oryza sativaOs09g03817009630.m03049--3e-1At3g01980short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.039e+032Populus trichocarpaPtpAffx.86807.1.A1_atDN489676--1e+0At3g01980short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.031e-138Triticum aestivumTa.3740.1.A1_atBJ262607--1e+0At2g25510unknown proteinC.G.S.X.
0.032e+032Vitis vinifera1622691_s_atAF176496.1hypothetical protein LOC100264325-7e-13At1g09640elongation factor 1B-gamma, putative / eEF-1B gamma, putativeC.G.S.X.
0.033e+032Zea maysZm.3640.1.A1_atAY111661.1hypothetical protein LOC100277622-4e+0At5g56865unknown proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage