CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g01970

Gene name WRKY45

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.14 6.8 At3g01970 821270 WRKY45 member of WRKY Transcription Factor; Group I S.X. H.G.
0.19 12.7 At2g41380 818736 embryo-abundant protein-related F:methyltransferase activity;P:response to cadmium ion;C:mitochondrion;BPFOMA S.X. H.G.
0.15 7.8 At1g60730 842367 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOFMPA S.X. H.G.
0.05 1.1 At2g15760 816070 calmodulin-binding protein F:calmodulin binding;P:biological_process unknown;C:plasma membrane;P S.X. H.G.
0.01 0.2 At2g43510 818952 ATTI1 Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
73.2 99.9 E-ATMX-31-raw-cel-1516948018
71.5 99.9 E-MEXP-1797-raw-cel-1669768030
70.4 99.9 E-MEXP-1797-raw-cel-1669767967
64.2 99.8 E-MEXP-1797-raw-cel-1669767940
56.5 99.8 E-MEXP-711-raw-cel-1563002902
50.8 99.8 GSM128677 Underwood_1-30_DC3000-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
47.3 99.8 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
44.6 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.5 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
40.5 99.8 E-MEXP-1797-raw-cel-1669768039
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.28 1e-9 63 At5g13080 831147 WRKY75 WRKY75 is one of several transcription factors induced during Pi deprivation. It is nuclear localized and regulated differentially during Pi starvation. RNAi mediated suppression of WRKY75 made the plants more susceptible to Pi stress as indicated by the higher accumulation of anthocyanin during Pi starvation. C.G. S.X.
0.06 2e-4 46 At5g49520 835012 WRKY48 member of WRKY Transcription Factor; Group II-c C.G. S.X.
0.04 9e-4 44 At5g46350 834678 WRKY8 member of WRKY Transcription Factor; Group II-c C.G. S.X.
0.05 5e-2 38 At5g24110 832476 WRKY30 member of WRKY Transcription Factor; Group III C.G. S.X.
0.02 5e-2 38 At3g61600 825333 ATPOB1 POZ/BTB containing-protein AtPOB1 C.G. S.X.
0.03 2e-1 36 At4g31550 829282 WRKY11 member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 1e-12 73 Glycine max Gma.4400.1.S1_at BI317776 WRKY53 - 4e-32 At5g13080 WRKY75 C.G. S.X.
0.13 4e-7 54 Hordeum vulgare Contig13268_at Contig13268 - - 5e-12 At2g46130 WRKY43 C.G. S.X.
0.10 3e-8 59 Oryza sativa Os11g0490900 AK108860.1 - WRKY transcription factor 72 1e-11 At5g13080 WRKY75 C.G. S.X.
0.18 1e-6 54 Populus trichocarpa PtpAffx.223450.1.S1_at pmrna41470 hypothetical protein - 1e-17 At5g13080 WRKY75 C.G. S.X.
0.06 6e-5 48 Triticum aestivum TaAffx.91377.1.S1_at BJ322852 WRKY3 transcription factor - 3e-8 At2g44745 WRKY family transcription factor C.G. S.X.
0.10 2e-5 48 Vitis vinifera 1622778_at BQ797582 WRKY-type DNA binding protein 1 - 5e-22 At5g13080 WRKY75 C.G. S.X.
0.12 2e-3 42 Zea mays Zm.9923.1.A1_at BM349111 - - 1e+0 At2g46130 WRKY43 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage