CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g01630

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.91 95.6 At3g01630 819891 - F:unknown;P:unknown;C:unknown;PBOFAM S.X. H.G.
0.73 85.5 At4g27790 828892 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB S.X. H.G.
0.73 85.5 At2g40990 818699 zinc ion binding F:zinc ion binding;P:unknown;C:cellular_component unknown;MOFP S.X. H.G.
0.72 84.8 At3g18220 821350 phosphatidic acid phosphatase family protein / PAP2 family protein F:catalytic activity, phosphatidate phosphatase activity;P:biological_process unknown;C:membrane;MFOBPAV S.X. H.G.
0.71 84.2 At1g18990 838480 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOPFBVA S.X. H.G.
0.71 84.2 At3g21570 821711 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.70 83.5 At5g39420 833938 cdc2cAt (Arabidopsis thaliana cdc2c) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MPOFBVA S.X. H.G.
0.70 83.5 At3g20530 821599 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.70 83.5 At3g02810 821236 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVA S.X. H.G.
0.69 82.9 At3g56600 824827 inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:biological_process unknown;C:unknown;PMOFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
283.1 100.0 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
259.4 100.0 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
204.5 100.0 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
192.8 100.0 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
181.8 100.0 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
164.6 100.0 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
148.0 99.9 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
141.0 99.9 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
117.8 99.9 E-ATMX-35-raw-cel-1574334880
115.3 99.9 E-MEXP-1138-raw-cel-1432772714
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.24 1e-14 81 At1g31470 840037 NFD4 (NUCLEAR FUSION DEFECTIVE 4) F:unknown;P:response to salt stress;C:mitochondrion;PBFOAM C.G. S.X.
0.12 4e-9 63 At5g45275 2746193 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFBOAM C.G. S.X.
0.15 3e-6 54 At4g19450 827686 nodulin-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOFAM C.G. S.X.
0.02 2e-1 38 At5g26930 832751 zinc finger (GATA type) family protein F:transcription factor activity, sequence-specific DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM C.G. S.X.
0.01 2e-1 38 At1g61810 842478 BGLU45 (BETA-GLUCOSIDASE 45) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA C.G. S.X.
0.01 8e-1 36 Atmg00560 - - encodes a mitochondrial ribosomal protein L2, a constituent of the large subunit of the ribosomal complex C.G. S.X.
0.02 8e-1 36 At4g08895 826467 inorganic phosphate transporter family protein F:unknown;P:unknown;C:membrane;PFBAO C.G. S.X.
0.01 8e-1 36 At2g07715 815389 ribosomal protein L2, putative F:structural constituent of ribosome;P:translation;C:mitochondrion, ribosome, intracellular, large ribosomal subunit;BOPFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Glycine max GmaAffx.56494.1.S1_at AW394992 - - 6e-8 At3g05350 aminopeptidase/ hydrolase C.G. S.X.
0.04 6e-3 42 Hordeum vulgare Contig14067_at Contig14067 - - 1e-7 At1g31470 NFD4 (NUCLEAR FUSION DEFECTIVE 4) C.G. S.X.
0.03 2e+0 36 Oryza sativa Os11g0107400 AK065945.1 - Nodulin-like domain containing protein 1e-9 At5g45275 - C.G. S.X.
0.03 2e-2 42 Populus trichocarpa PtpAffx.9188.1.A1_at CK094879 - - 6e-12 At4g19450 nodulin-related C.G. S.X.
0.03 2e-4 48 Triticum aestivum TaAffx.52853.1.S1_at CA597526 - - 7e-5 At3g01630 - C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1617225_at BQ798495 hypothetical protein LOC100245147 - 3e-1 At2g18870 VEL3 (VERNALIZATION5/VIN3-LIKE) C.G. S.X.
0.01 1e+0 34 Zea mays Zm.4180.1.S1_at CD964540 hypothetical protein LOC100275988 - 2e+0 At5g35530 40S ribosomal protein S3 (RPS3C) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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