CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g01570

Gene name glycine-rich protein / oleosin

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.91 95.6 At3g01570 821106 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P S.X. H.G.
1.00 100.0 At5g40420 834040 OLEO2 (OLEOSIN 2) Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds. S.X. H.G.
0.80 89.8 At2g28490 817397 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;BMPOFVA S.X. H.G.
0.73 85.5 At3g22640 821835 PAP85 F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POM S.X. H.G.
0.71 84.2 At1g73190 843653 TIP3 Moves to the Protein Storage Vacuole in a Golgi independent manner S.X. H.G.
0.71 84.2 At4g25140 828617 OLEO1 (OLEOSIN 1) Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
216.3 100.0 E-ATMX-1-raw-cel-1112746095
215.5 100.0 E-ATMX-1-raw-cel-1112746209
197.2 100.0 E-ATMX-1-raw-cel-1112746267
192.4 100.0 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
180.0 100.0 GSM10453 WT Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
176.6 100.0 E-ATMX-1-raw-cel-1112746154
171.8 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
171.2 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
169.4 100.0 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
158.1 99.9 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 7e-2 38 At5g08510 830750 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMAB C.G. S.X.
0.01 3e-1 36 At5g51230 835198 EMF2 (EMBRYONIC FLOWER 2) Polycomb group protein with zinc finger domain involved in negative regulation of reproductive development. Forms a complex with FIE, CLF, and MSI1. This complex modulates the expression of target genes including AG, PI and AP3. C.G. S.X.
0.02 1e+0 34 At3g47080 823861 binding F:binding;P:unknown;C:unknown;PBOAM C.G. S.X.
0.04 1e+0 34 At1g77540 844090 H3/H4 histone acetyltransferase Encodes a H3/H4 histone acetyltransferase. Belongs to the GNAT family, whose many members are involved in histone acetylation and chromatin remodeling, and are important for the regulation of cell growth and development. C.G. S.X.
0.01 4e+0 32 At5g56730 835774 peptidase M16 family protein / insulinase family protein F:metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding;P:proteolysis;C:mitochondrion, chloroplast, plastid;BOMFPAV C.G. S.X.
0.01 4e+0 32 At5g39680 833964 EMB2744 (EMBRYO DEFECTIVE 2744) F:unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;POMF C.G. S.X.
0.02 4e+0 32 At5g66710 836804 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e+0 32 Glycine max GmaAffx.50026.1.S1_at BG551350 - - 2e+0 At3g01570 glycine-rich protein / oleosin C.G. S.X.
0.03 8e+0 30 Hordeum vulgare HVSMEg0012J16r2_at HVSMEg0012J16r2 - - 3e-1 At4g32030 unknown protein C.G. S.X.
0.03 2e+0 34 Oryza sativa OsAffx.7034.1.S1_at - - - 0 C.G. S.X.
0.03 6e+0 32 Populus trichocarpa PtpAffx.2772.2.S1_at BU824620 hypothetical protein - 1e-29 At5g23090 NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13) C.G. S.X.
0.04 7e-2 38 Triticum aestivum TaAffx.85452.2.S1_at CA622536 - - 7e-2 At3g01570 glycine-rich protein / oleosin C.G. S.X.
0.03 2e-2 38 Vitis vinifera 1610056_s_at CB341777 hypothetical protein LOC100256876 /// hypothetical protein LOC100261970 /// hypothetical protein LOC100266371 - 8e-3 At5g25280 serine-rich protein-related C.G. S.X.
0.03 3e-2 38 Zea mays Zm.6569.5.A1_at CF637455 - - 2e-1 At3g01570 glycine-rich protein / oleosin C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0019915 The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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