Gene omics information

Query gene ID At3g01560
Gene name proline-rich family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g01560821110proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBVAS.X.H.G.
0.5166.3At3g60030825173SPL12 (squamosa promoter-binding protein-like 12)F:transcription factor activity;P:regulation of transcription;C:nucleus;PMOS.X.H.G.
0.5166.3At4g34100829556protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:chloroplast;MPOFVS.X.H.G.
0.5065.3At3g08850820032RAPTOR1Encodes one of two Arabidopsis RAPTOR/KOG1 homologs. RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients. Mutants show embryo lethal phenotype which occurs at pre-globular stage. May interact with TOR kinase in a rapamycin like signaling pathway. Interacts with TOR and S6K1 in vivo. Overexpression of RAPTOR1 rendered the S6K1 osmotic stress insensitive.S.X.H.G.
0.4963.5At2g01270814654AtQSOX2 (quiescin-sulfhydryl oxidase 2)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.S.X.H.G.
0.4963.5At3g61600825333ATPOB1POZ/BTB containing-protein AtPOB1S.X.H.G.
0.4963.5At3g14010820615CID4 (CTC-Interacting Domain 4)hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (GI:2737884) (Saccharomyces cerevisiae); weak similarity to ataxin-2 related protein (GI:1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2.S.X.H.G.
0.4862.5At1g22620838868ATSAC1 (suppressor of actin 1)SAC domain phosphoinositide (3,5)P2 phosphatase. Colocalized with a Golgi Marker. Required for normal cell morphogenesis, cell wall synthesis, and actin organization.S.X.H.G.
0.4659.8At3g22380821807TIC (TIME FOR COFFEE)Encodes a nucleus-acting plant-specific clock regulator working close to the central oscillator and affecting the circadian gating of light responses. Circadian gating is the alteration of circadian phase according to the photoperiod of the entraining day/light cycle and the rhythmic antagonism of light responses in the early subjective night. TIC differentially regulates CCA1 and PRR9 from LHY, with LHY expression as a dominant genetic target of TIC action.S.X.H.G.
0.4659.8At2g31820817739ankyrin repeat family proteinF:protein binding;P:unknown;C:plasma membrane;MOFBPVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
44.599.8GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
21.599.6GSM142633MC002_ATH1_A4.2-dubos-6kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
20.799.6E-MEXP-98-raw-cel-320188804
20.599.6GSM128675Underwood_1-28_DC3000-10e8-7h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
19.199.6GSM142634MC002_ATH1_A4.3-dubos-6kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
18.799.5GSM128650Underwood_1-3_Cor-10e6-24h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
17.999.5GSM142632MC002_ATH1_A4.1-dubos-6kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.999.5GSM142630MC002_ATH1_A3.2-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
16.699.5GSM142651MC002_ATH1_A10.2-dubos-wthGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
16.399.5GSM142631MC002_ATH1_A3.3-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.451e-24115At5g14540831305proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBVAC.G.S.X.
0.011e-242At4g33160829453ubiquitin-protein ligaseF:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PC.G.S.X.
0.012e-138At5g26660832723ATMYB86 (MYB DOMAIN PROTEIN 86)a MYB gene encodes a transcriptional repressor of the C4H gene which is involved in the biosynthesis of sinapate esters.C.G.S.X.
0.022e-138At3g29000822540calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOFPBVC.G.S.X.
0.022e-138At2g32360817797ubiquitin family proteinF:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MOFPVBAC.G.S.X.
0.022e-138At1g05650837072polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVC.G.S.X.
0.018e-136At5g06590830547unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.018e-136At4g36380829790ROT3 (ROTUNDIFOLIA 3)Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in the conversion step of typhasterol (TY) to castasterone (CS). As 6-deoxo-CS was unable to restore the phenotype of rot3-1, it has been postulated that ROT3 might be specifically involved in the conversion of TY to CS in the C6-oxidation pathway of brassinolide. Recently, CYP90C1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates).C.G.S.X.
0.018e-136At4g14700827121ORC1A (ORIGIN RECOGNITION COMPLEX 1)Encodes origin of replication complex 1a subunit.The protein contains a PHD domain,binds methylated DNA and appears to function as a transcriptional activator.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.027e-240Glycine maxGmaAffx.76814.1.S1_atAW756063--3e-2At3g14870unknown proteinC.G.S.X.
0.024e-136Hordeum vulgareEBem10_SQ005_L23_x_atEBem10_SQ005_L23--7e+0At5g0385040S ribosomal protein S28 (RPS28B)C.G.S.X.
0.026e+034Oryza sativaOsAffx.6195.1.S1_at---0C.G.S.X.
0.052e-242Populus trichocarpaPtpAffx.5671.3.A1_a_atBP926683hypothetical protein-7e-3At3g01560proline-rich family proteinC.G.S.X.
0.028e-136Triticum aestivumTaAffx.59710.1.S1_atCA596545--1e+0At5g59050unknown proteinC.G.S.X.
0.026e-238Vitis vinifera1619670_atCF568831--3e-19At1g12410CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)C.G.S.X.
0.033e-136Zea maysZm.14921.1.S1_atCF056081hypothetical protein LOC100272723-4e-1At3g01560proline-rich family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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