CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g01380

Gene name catalytic/ transferase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g01380 821231 catalytic/ transferase F:transferase activity, catalytic activity;P:GPI anchor biosynthetic process, metabolic process;C:endoplasmic reticulum;MFOPB S.X. H.G.
0.51 66.3 At5g17250 831589 catalytic/ transferase F:transferase activity, catalytic activity;P:GPI anchor biosynthetic process, metabolic process;C:endomembrane system;MFOBP S.X. H.G.
0.50 65.3 At5g64950 836619 mitochondrial transcription termination factor-related / mTERF-related F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMO S.X. H.G.
0.50 65.3 At2g22530 816786 catalytic/ transferase F:transferase activity, catalytic activity;P:metabolic process, phospholipid biosynthetic process;C:endomembrane system;MFOBPA S.X. H.G.
0.49 63.5 At2g27340 817277 - F:molecular_function unknown;P:biological_process unknown;C:unknown;FMOBP S.X. H.G.
0.49 63.5 At4g37630 829917 CYCD5 core cell cycle genes S.X. H.G.
0.44 57.2 At5g08270 830723 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO S.X. H.G.
0.44 57.2 At5g45300 834566 BMY2 (BETA-AMYLASE 2) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:cellular_component unknown;PMBOF S.X. H.G.
0.43 55.3 At2g39910 818578 binding F:binding;P:biological_process unknown;C:unknown;MP S.X. H.G.
0.42 53.9 At3g47390 823893 cytidine/deoxycytidylate deaminase family protein F:in 6 functions;P:riboflavin biosynthetic process;C:unknown;BOAFPMV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
223.3 100.0 GSM133756 Lindsey_1-10_heart-stage-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
69.6 99.9 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
63.7 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
48.4 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.1 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.9 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
44.6 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.5 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.2 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.1 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 9e-2 40 At5g51750 835249 ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3) F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPFOAM C.G. S.X.
0.01 3e-1 38 At4g01883 3770374 - F:unknown;P:unknown;C:chloroplast;BOP C.G. S.X.
0.01 3e-1 38 At4g02570 825648 ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response. C.G. S.X.
0.01 1e+0 36 At5g01870 831705 lipid transfer protein, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. C.G. S.X.
0.01 1e+0 36 At4g11690 826774 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:endomembrane system;POMFBA C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-17 93 Glycine max GmaAffx.6040.1.S1_at BU551401 - - 1e-18 At3g01380 catalytic/ transferase C.G. S.X.
0.16 8e-19 95 Hordeum vulgare Contig16267_at Contig16267 - - 8e-19 At3g01380 catalytic/ transferase C.G. S.X.
0.16 9e-25 117 Oryza sativa Os02g0581000 9630.m03543 - Phosphatidylinositol glycan class N (Fragment) 5e-25 At3g01380 catalytic/ transferase C.G. S.X.
0.14 4e-32 141 Populus trichocarpa Ptp.2508.1.S1_at CK093697 hypothetical protein - 8e-33 At3g01380 catalytic/ transferase C.G. S.X.
0.09 6e-9 63 Triticum aestivum Ta.14334.1.S1_at BU100656 - - 2e-9 At3g01380 catalytic/ transferase C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1622460_at CD010264 - - 9e-5 At3g25550 F-box family protein C.G. S.X.
0.10 7e-10 65 Zea mays Zm.13654.1.A1_at AI615242 - - 7e-10 At3g01380 catalytic/ transferase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006506 The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol moiety is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate moiety, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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