Gene omics information

Query gene ID At3g01370
Gene name ATCFM2 (CRM FAMILY MEMBER 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3541.6At3g01370821288ATCFM2 (CRM FAMILY MEMBER 2)Encodes a protein containing a CRM domain that is involved in group I and group II intron splicing.S.X.H.G.
0.7586.9At3g23070821881RNA bindingF:RNA binding;P:unknown;C:chloroplast;PMOFBAVS.X.H.G.
0.2930.3At3g18390821368EMB1865 (embryo defective 1865)F:RNA binding;P:embryonic development ending in seed dormancy;C:chloroplast;OPMFVBAS.X.H.G.
0.2319.3At3g04340819589emb2458 (embryo defective 2458)F:nucleoside-triphosphatase activity, ATPase activity, metalloendopeptidase activity, nucleotide binding, ATP binding;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAVS.X.H.G.
0.1811.4At1g71720843502S1 RNA-binding domain-containing proteinF:RNA binding;P:unknown;C:chloroplast;BOPMAFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
25.099.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
14.599.4GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
13.299.4GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.199.4GSM317619Apex_14DAS_1GSE12676Arabidopsis thaliana Ler developmental series
13.099.4GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.699.3GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.899.3GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
11.599.3GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
10.799.2GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.199.2GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.016e-344At3g25440822128RNA bindingF:RNA binding;P:biological_process unknown;C:chloroplast;PMOFVBAC.G.S.X.
0.033e-242At3g23070821881RNA bindingF:RNA binding;P:unknown;C:chloroplast;PMOFBAVC.G.S.X.
0.011e-140At4g29750829097RNA bindingF:RNA binding;P:unknown;C:chloroplast;PMOFAC.G.S.X.
0.011e-140At1g44800841044nodulin MtN21 family proteinF:molecular_function unknown;P:unknown;C:membrane;BOPAMC.G.S.X.
0.014e-138At3g42725823305unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.014e-138At3g63430825518unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.014e-138At3g10010820162DML2 (DEMETER-LIKE 2)Encodes a protein with DNA glycosylase activity that is involved in maintaining methylation marks.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.111e-23113Glycine maxGmaAffx.73074.1.S1_atBI425721--1e-24At3g01370ATCFM2 (CRM FAMILY MEMBER 2)C.G.S.X.
0.041e-861Hordeum vulgareContig13112_atContig13112--1e-8At3g01370ATCFM2 (CRM FAMILY MEMBER 2)C.G.S.X.
0.042e-1069Oryza sativaOsAffx.26382.1.S1_at---0C.G.S.X.
0.242e-40169Populus trichocarpaPtpAffx.200939.1.S1_atpmrna1844hypothetical protein-1e-40At3g01370ATCFM2 (CRM FAMILY MEMBER 2)C.G.S.X.
0.012e+036Triticum aestivumTaAffx.39352.1.A1_atBG908462--2e-1At3g48940remorin family proteinC.G.S.X.
0.075e-1685Vitis vinifera1611261_atCB001661--4e-16At3g01370ATCFM2 (CRM FAMILY MEMBER 2)C.G.S.X.
0.014e-240Zea maysZm.772.1.S1_atBM351247--2e-6At1g32080membrane protein, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0000372The splicing of Group I introns. This occurs by a ribozymic mechanism where the intron sequence forms a distinct 3D structure, characteristic of Group I introns and involved in determining the locations of the splice sites (there do not appear to be consensus splice site sequences) as well as having a role in catalyzing the splicing reactions, though protein factors are also required in vivo. Splicing occurs by a series of two transesterification reactions, generally with exogenous guanosine as the initiating nucleophile. The intron is excised as a linear piece (though it may subsequently circularize).
XGO:0000373The splicing of Group II introns. This occurs by a ribozymic mechanism where the intron sequence forms a distinct 3D structure, characteristic of Group II introns and containing splice site consensus sequences, that is involved in catalyzing the splicing reactions, though protein factors are also required in vivo. Splicing occurs by a series of two transesterification reactions (mechanistically similar to those for splicing of nuclear mRNAs) initiated by a bulged adenosine residue within the intron sequence as the initiating nucleophile. The intron is excised as a lariat.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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