CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g01220

Gene name ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.89 94.6 At3g01220 821232 ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity. S.X. H.G.
0.89 94.6 At4g28650 828983 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.75 86.9 At3g50640 824227 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.75 86.9 At3g54770 824642 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB S.X. H.G.
0.31 33.8 At1g15210 838087 PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane, chloroplast, membrane;BOMFAPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
104.3 99.9 GSM184895 Arabidopsis, root cells, cortex, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
102.2 99.9 GSM266672 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
88.6 99.9 GSM226536 L6SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
83.6 99.9 GSM184896 Arabidopsis, root cells, cortex, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
83.3 99.9 GSM226547 Slice5JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
63.3 99.8 GSM184507 Pericycle root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
60.3 99.8 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
58.9 99.8 GSM252692 Section of Root from 270 mm to 340 mm harvested immediately rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
54.4 99.8 GSM184897 Arabidopsis, root cells, cortex, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
53.2 99.8 GSM265428 Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.52 1e-66 254 At5g15150 831367 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem. C.G. S.X.
0.18 5e-22 105 At1g69780 843314 ATHB13 Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. C.G. S.X.
0.08 1e-4 48 At5g65310 836656 ATHB5 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 5) Encodes a class I HDZip (homeodomain-leucine zipper) protein that is a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. C.G. S.X.
0.01 7e-3 42 At1g10910 837634 - F:unknown;P:biological_process unknown;C:unknown;POMFBA C.G. S.X.
0.01 3e-2 40 At5g55780 835672 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMFO C.G. S.X.
0.04 3e-2 40 At1g26960 839587 AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. C.G. S.X.
0.03 1e-1 38 At5g52547 2746209 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-6 54 Glycine max Gma.9506.1.S1_at BF597401 - - 3e-9 At1g26960 AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23) C.G. S.X.
0.03 8e-1 34 Hordeum vulgare Contig9048_s_at Contig9048 - - 4e-2 At3g13500 unknown protein C.G. S.X.
0.04 1e-2 42 Oryza sativa OsAffx.7162.1.S1_at - - - 0 C.G. S.X.
0.15 2e-22 107 Populus trichocarpa PtpAffx.14780.1.S1_at DN497970 hypothetical protein - 2e-19 At1g69780 ATHB13 C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.30285.1.S1_at CA626476 - - 4e-3 At3g13580 60S ribosomal protein L7 (RPL7D) C.G. S.X.
0.10 2e-13 75 Vitis vinifera 1610657_at CB978484 hypothetical protein LOC100241332 - 2e-22 At1g69780 ATHB13 C.G. S.X.
0.02 3e-3 42 Zea mays Zm.4814.3.A1_a_at CD440511 glutathione transferase5 /// elongation factor 1-beta - 2e-10 At1g30230 elongation factor 1-beta / EF-1-beta C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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