CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g01190

Gene name peroxidase 27 (PER27) (P27) (PRXR7)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.56 73.0 At3g01190 821314 peroxidase 27 (PER27) (P27) (PRXR7) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
0.71 84.2 At2g27000 817242 CYP705A8 member of CYP705A S.X. H.G.
0.61 76.7 At5g17330 831599 GAD Encodes one of two isoforms of glutamate decarboxylase. S.X. H.G.
0.61 76.7 At5g51060 835179 RHD2 (ROOT HAIR DEFECTIVE 2) RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx. S.X. H.G.
0.57 73.8 At5g39970 833994 catalytic F:catalytic activity;P:biological_process unknown;C:anchored to membrane;OBPMAF S.X. H.G.
0.55 70.6 At4g30170 829140 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.50 65.3 At2g14100 815896 CYP705A13 a member of the cytochrome P450 family S.X. H.G.
0.48 62.5 At1g15210 838087 PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane, chloroplast, membrane;BOMFAPV S.X. H.G.
0.38 46.7 At1g69810 843317 WRKY36 member of WRKY Transcription Factor; Group II-b S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
145.9 99.9 GSM226537 L7SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
124.9 99.9 GSM184504 Pericycle root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
104.2 99.9 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
99.6 99.9 GSM184507 Pericycle root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
75.9 99.9 GSM184510 Pericycle root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
67.3 99.8 GSM266670 Arabidopsis, root cells, cortex, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
63.7 99.8 GSM184517 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
51.6 99.8 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
49.9 99.8 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
48.7 99.8 GSM265422 Arabidopsis, root, longitudinal zone 3, standard conditions, rep1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.36 3e-36 153 At5g15180 831370 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB C.G. S.X.
0.03 1e-4 48 At4g30170 829140 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB C.G. S.X.
0.06 1e-4 48 At3g21770 821731 peroxidase 30 (PER30) (P30) (PRXR9) F:transferase activity, transferring glycosyl groups, peroxidase activity;P:response to oxidative stress;C:cell wall, nucleus, cytoplasm, plant-type cell wall;PFOBM C.G. S.X.
0.04 5e-4 46 At5g66390 836771 peroxidase 72 (PER72) (P72) (PRXR8) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB C.G. S.X.
0.04 2e-3 44 At5g51890 835264 peroxidase encodes peroxidase involved in the lignification of tracheary elements (TE) in roots C.G. S.X.
0.02 2e-3 44 At5g06730 830562 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plasma membrane;PFOBM C.G. S.X.
0.03 2e-3 44 At1g44970 841062 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM C.G. S.X.
0.03 3e-2 40 At1g14550 838017 anionic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM C.G. S.X.
0.02 1e-1 38 At5g14130 831263 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-2 40 Glycine max Gma.17816.2.S1_s_at BE020641 - - 2e-10 At1g68850 peroxidase, putative C.G. S.X.
0.04 2e-7 56 Hordeum vulgare Contig14609_at Contig14609 - - 7e-7 At3g01190 peroxidase 27 (PER27) (P27) (PRXR7) C.G. S.X.
0.04 1e-2 42 Oryza sativa Os05g0499400 AK068896.1 - - 1e-2 At3g01190 peroxidase 27 (PER27) (P27) (PRXR7) C.G. S.X.
0.07 7e-4 46 Populus trichocarpa PtpAffx.224349.1.S1_s_at pmrna42815 hypothetical protein - 5e-4 At3g01190 peroxidase 27 (PER27) (P27) (PRXR7) C.G. S.X.
0.04 8e-3 42 Triticum aestivum TaAffx.112436.1.S1_at CA623946 - - 1e+0 At3g03670 peroxidase, putative C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1607942_at CF514754 hypothetical protein LOC100255112 - 1e-6 At1g05260 RCI3 (RARE COLD INDUCIBLE GENE 3) C.G. S.X.
0.03 9e-4 44 Zea mays Zm.4541.1.S1_at AY104176.1 hypothetical protein LOC100274427 - 5e-8 At5g67400 peroxidase 73 (PER73) (P73) (PRXR11) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00413 Peroxidase, class III

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00360 Phenylalanine metabolism
00680 Methane metabolism
00940 Phenylpropanoid biosynthesis
01061 Biosynthesis of phenylpropanoids
01100 Metabolic pathways
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