CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g01160

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At3g01160 820504 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;MOFBPVA S.X. H.G.
0.77 88.0 At3g21540 821708 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:nucleolus, heterotrimeric G-protein complex;MFOPBA S.X. H.G.
0.75 86.9 At2g40700 818665 DEAD/DEAH box helicase, putative (RH17) F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:unknown;BOMFPAV S.X. H.G.
0.63 78.1 At3g11964 820370 RNA binding F:RNA binding;P:mRNA processing, RNA processing;C:nucleolus, plasma membrane;BOMFPA S.X. H.G.
0.63 78.1 At3g09720 820129 DEAD/DEAH box helicase, putative F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.62 77.3 At3g57940 824963 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFAPV S.X. H.G.
0.62 77.3 At4g05410 825889 transducin family protein / WD-40 repeat family protein F:nucleotide binding, nucleic acid binding;P:mitochondrial fission;C:nucleolus, small nucleolar ribonucleoprotein complex, anaphase-promoting complex, CUL4 RING ubiquitin ligase complex;MFOBPVA S.X. H.G.
0.59 74.7 At4g04940 825833 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:CUL4 RING ubiquitin ligase complex;MFBOPA S.X. H.G.
0.49 63.5 At3g18600 821391 DEAD/DEAH box helicase, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:nucleolus;BOMFPAV S.X. H.G.
0.47 61.2 At4g32720 829408 AtLa1 (Arabidopsis thaliana La protein 1) Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
46.6 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
35.8 99.7 GSM265419 Arabidopsis, root, longitudinal zone 1, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
29.3 99.7 GSM266663 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
25.7 99.7 GSM133975 Birnbaum_1-5_StageI-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
23.1 99.6 GSM265418 Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
21.0 99.6 E-MEXP-849-raw-cel-1181981030
20.6 99.6 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.1 99.6 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.7 99.6 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.4 99.6 GSM133974 Birnbaum_1-4_StageI-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 5e-6 54 At3g51880 824351 HMGB1 (HIGH MOBILITY GROUP B 1) Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated. C.G. S.X.
0.02 3e-4 48 At5g02050 831729 mitochondrial glycoprotein family protein / MAM33 family protein F:unknown;P:biological_process unknown;C:chloroplast, mitochondrial matrix;PFOMB C.G. S.X.
0.02 1e-3 46 At5g25590 832634 - F:unknown;P:N-terminal protein myristoylation;C:unknown;MOFPBVA C.G. S.X.
0.01 1e-3 46 At1g08290 837349 zinc finger (C2H2 type) protein (WIP3) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPF C.G. S.X.
0.02 1e-3 46 At1g08340 837354 rac GTPase activating protein, putative F:Rac GTPase activator activity;P:signal transduction;C:intracellular;MOFPVBA C.G. S.X.
0.03 4e-3 44 At5g59000 836017 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBA C.G. S.X.
0.02 4e-3 44 At3g53310 824499 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MBOFPV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-4 48 Glycine max GmaAffx.73977.1.S1_at BU546538 - - 9e-3 At2g30990 unknown protein C.G. S.X.
0.02 3e-2 40 Hordeum vulgare Contig5793_at Contig5793 - - 1e-1 At5g23950 C2 domain-containing protein C.G. S.X.
0.02 2e-3 46 Oryza sativa Os02g0130200 AK106802.1 - Glycoside hydrolase, family 28 protein 1e-6 At5g24890 unknown protein C.G. S.X.
0.14 7e-12 73 Populus trichocarpa PtpAffx.221951.1.S1_at pmrna39079 hypothetical protein - 3e-12 At3g01160 unknown protein C.G. S.X.
0.03 5e-3 44 Triticum aestivum Ta.7522.3.S1_at CA727768 - - 1e+0 At5g41050 unknown protein C.G. S.X.
0.02 1e-3 44 Vitis vinifera 1609910_at CF403159 hypothetical protein LOC100243244 - 2e-2 At1g47970 unknown protein C.G. S.X.
0.03 3e-2 40 Zea mays Zm.6201.1.A1_at BE643575 - - 1e-1 At3g50690 leucine-rich repeat family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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