Gene omics information

Query gene ID At2g48160
Gene name -
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At1g43850840981SEU (seuss)Encodes a transcriptional co-regulator of AGAMOUS, that functions with LEUNIG to repress AG in the outer floral whorls.S.X.H.G.
0.5773.8At1g63700842674YDA (YODA)member of MEKK subfamily, a component of the stomatal development regulatory pathway.S.X.H.G.
0.4050.8At3g24870822085DNA bindingF:DNA binding;P:unknown;C:apoplast;MOFPBVAS.X.H.G.
0.2522.6At1g31730840060epsilon-adaptin, putativeF:protein binding, clathrin binding, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat;OMFPBVS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
60.199.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
39.699.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.099.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
24.199.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
20.399.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
18.799.5GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
18.499.5GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.425e-177623At3g63070825482PWWP domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBC.G.S.X.
0.011e-450At5g23150832379HUA2 (ENHANCER OF AG-4 2)Putative transcription factor. Member of the floral homeotic AGAMOUS pathway.Mutations in HUA enhance the phenotype of mild ag-4 allele. Single hua mutants are early flowering and have reduced levels of FLC mRNA. Other MADS box flowering time genes such as FLM and MAF2 also appear to be regulated by HUA2. HUA2 normally activates FLC expression and enhances AG function.C.G.S.X.
0.012e-346At5g08230830719PWWP domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVAC.G.S.X.
0.013e-242At1g17790838357DNA-binding bromodomain-containing proteinF:DNA binding;P:biological_process unknown;C:chloroplast;MOFBPVAC.G.S.X.
0.011e-140At5g55160835609SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2)Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays.C.G.S.X.
0.015e-138At5g38300833812unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOC.G.S.X.
0.015e-138At4g02650828212epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;MOPFBAVC.G.S.X.
0.005e-138At3g01460821132MBD9Encodes a protein with a methyl-CpG-binding domain. Has sequence similarity to human MBD proteins. Involved in the modification of the FLC chromatin acetylation state to affect FLC expression. Mutants show an early flowering, and enhanced shoot branching phenotypes.C.G.S.X.
0.015e-138At2g37660818343binding / catalytic/ coenzyme bindingF:coenzyme binding, binding, catalytic activity;P:defense response to bacterium;C:thylakoid, apoplast, chloroplast stroma, chloroplast;BOPFAMC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.063e-965Glycine maxGmaAffx.78728.1.S1_atBQ785556--2e-5At3g63070PWWP domain-containing proteinC.G.S.X.
0.016e-240Hordeum vulgareContig18562_atContig18562--2e+0At3g51100unknown proteinC.G.S.X.
0.023e-140Oryza sativaOs07g0655500AK121027.1-PWWP domain containing protein2e-1At2g48160-C.G.S.X.
0.031e-1173Populus trichocarpaPtpAffx.211807.1.S1_atpmrna23153hypothetical protein-6e-13At2g48160-C.G.S.X.
0.015e-138Triticum aestivumTaAffx.67620.1.S1_atCA679418--5e+0At5g44568unknown proteinC.G.S.X.
0.012e+034Vitis vinifera1614194_atCA808916--8e-18At3g18790-C.G.S.X.
0.019e-136Zea maysZm.8118.1.A1_atAY107915.1aldehyde dehydrogenase 3B1-1e-1At4g37290unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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