Gene omics information

Query gene ID At2g48140
Gene name EDA4 (embryo sac development arrest 4)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7385.5At2g48140819426EDA4 (embryo sac development arrest 4)F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFVS.X.H.G.
1.00100.0At1g68850843218peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMS.X.H.G.
1.00100.0At5g41040834106transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBOS.X.H.G.
0.8693.1At4g36610829813hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFAS.X.H.G.
0.6176.7At5g09530830812hydroxyproline-rich glycoprotein family proteinF:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
113.399.9E-MEXP-828-raw-cel-1156922634
104.099.9E-MEXP-828-raw-cel-1156922659
103.799.9E-MEXP-828-raw-cel-1156922684
79.199.9E-MEXP-828-raw-cel-1156922438
74.299.9E-ATMX-1-raw-cel-1112746154
71.499.9GSM226554Slice12JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
70.299.9GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
69.799.9GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
69.299.9GSM131697ATGE_81_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
67.499.8GSM75512Col-0 0h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.033e-136At3g24860822084hydroxyproline-rich glycoprotein family proteinF:transcription factor activity;P:biological_process unknown;C:chloroplast;POMVFBC.G.S.X.
0.023e-136At1g60940842385SNRK2.10 (SNF1-RELATED PROTEIN KINASE 2.10)encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.C.G.S.X.
0.021e+034At5g52010835276zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;PFOC.G.S.X.
0.011e+034At5g21040832228FBX2 (F-BOX PROTEIN 2)Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses.C.G.S.X.
0.011e+034At5g58350835947WNK4 (WITH NO K (=LYSINE) 4)Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.C.G.S.X.
0.011e+034At3g13772820587endomembrane protein 70, putativeF:unknown;P:unknown;C:integral to membrane, Golgi apparatus, plasma membrane;MPOFC.G.S.X.
0.021e+034At3g20015821540aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOC.G.S.X.
0.021e+034At2g33190817880F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.044e-136Glycine maxGma.18020.2.S1_a_atAW234304--1e-21At1g78290-C.G.S.X.
0.032e+032Hordeum vulgareContig14285_atContig14285--2e-2At5g37360unknown proteinC.G.S.X.
0.042e+034Oryza sativaOsAffx.24410.1.S1_x_at---0C.G.S.X.
0.032e+034Populus trichocarpaPtpAffx.37824.1.A1_atCV237570--9e-1At2g48140EDA4 (embryo sac development arrest 4)C.G.S.X.
0.048e-238Triticum aestivumTaAffx.98034.1.S1_atBQ482780--5e-2At2g48140EDA4 (embryo sac development arrest 4)C.G.S.X.
0.045e+030Vitis vinifera1619173_atCF514879hypothetical protein LOC100267228-4e+0Atmg01120-C.G.S.X.
0.032e+032Zea maysZm.4088.1.A1_atAI834541--3e+0At2g23970defense-related protein, putativeC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009561The process whose specific outcome is the progression of the embryo sac over time, from its formation as the megaspore to the mature structure. The process begins when three of the four haploid megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center.
CGO:0006869The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage