CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g48130

Gene name protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.63 78.1 At2g48130 819425 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;PBOM S.X. H.G.
0.93 96.4 At4g36610 829813 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFA S.X. H.G.
0.88 94.0 At5g13580 831202 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPV S.X. H.G.
0.83 91.4 At5g41040 834106 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO S.X. H.G.
0.80 89.8 At2g48140 819426 EDA4 (embryo sac development arrest 4) F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV S.X. H.G.
0.73 85.5 At1g68850 843218 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
0.71 84.2 At5g09520 830811 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA S.X. H.G.
0.71 84.2 At5g09530 830812 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
133.0 99.9 GSM226542 L12SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
96.8 99.9 E-MEXP-828-raw-cel-1156922659
85.8 99.9 GSM75509 Col-0 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
85.6 99.9 GSM75508 Col-0 0h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
84.9 99.9 GSM75512 Col-0 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
81.9 99.9 GSM226541 L11SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
74.5 99.9 E-MEXP-722-raw-cel-1062242948
71.0 99.9 GSM75517 slr-1 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
65.3 99.8 GSM75513 Col-0 2h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
57.9 99.8 E-MEXP-722-raw-cel-1062243183
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e+0 34 At4g04450 825775 WRKY42 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.01 4e+0 32 At5g17420 831608 IRX3 (IRREGULAR XYLEM 3) Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181). C.G. S.X.
0.01 4e+0 32 At4g15810 827262 GTP binding F:GTP binding;P:biological_process unknown;C:chloroplast outer membrane;BMOPFA C.G. S.X.
0.02 4e+0 32 At3g54260 824593 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PM C.G. S.X.
0.02 4e+0 32 At3g21175 821670 ZML1 (ZIM-LIKE 1) member of a novel family of plant-specific GATA-type transcription factors. C.G. S.X.
0.01 4e+0 32 At3g19430 821477 late embryogenesis abundant protein-related / LEA protein-related F:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVA C.G. S.X.
0.02 4e+0 32 At2g47890 819401 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 34 Glycine max HgAffx.3512.1.A1_at CK349178 - - 8e-1 At3g23637 DVL21 (DEVIL 21) C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HB23F22r_at HB23F22r - - 3e+0 At3g58010 unknown protein C.G. S.X.
0.04 8e+0 32 Oryza sativa OsAffx.4864.1.S1_at - - - 0 C.G. S.X.
0.04 6e+0 32 Populus trichocarpa PtpAffx.209737.1.S1_x_at pmrna19215 hypothetical protein - 3e-6 At3g23250 MYB15 (MYB DOMAIN PROTEIN 15) C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.56753.1.S1_at CA645099 - - 2e+0 At3g07425 unknown protein C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1622650_at CD714725 - - 1e-71 At1g15290 binding C.G. S.X.
0.03 2e+0 32 Zea mays Zm.18094.1.A1_at CF636218 - - 2e+0 At4g29930 basic helix-loop-helix (bHLH) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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