CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g47930

Gene name AGP26 (ARABINOGALACTAN PROTEIN 26)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.56 73.0 At2g47930 819405 AGP26 (ARABINOGALACTAN PROTEIN 26) F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OPMVBFA S.X. H.G.
0.71 84.2 At4g00400 828140 GPAT8 (glycerol-3-phosphate acyltransferase 8) Involved in cutin assembly. Is functional redundant of GPAT4. S.X. H.G.
0.54 69.5 At4g23820 828482 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA S.X. H.G.
0.48 62.5 At3g61550 825328 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.48 62.5 At3g20820 821630 leucine-rich repeat family protein F:protein binding;P:signal transduction, defense response;C:apoplast, cell wall, chloroplast, membrane;PMOBFA S.X. H.G.
0.40 50.8 At2g26250 817165 KCS10 (3-KETOACYL-COA SYNTHASE 10) epidermis-specific, encodes KCS10, a putative 3-ketoacyl-CoA synthase. probably involved in the synthesis of long-chain lipids found in the cuticle. S.X. H.G.
0.38 46.7 At3g16370 820884 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:apoplast;PBFOM S.X. H.G.
0.36 43.6 At1g01430 837247 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
0.33 38.1 At2g45470 819155 FLA8 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8) F:unknown;P:unknown;C:anchored to plasma membrane, apoplast, plasma membrane, anchored to membrane, plant-type cell wall;OBPMVFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
41.8 99.8 E-MEXP-838-raw-cel-1160704054
27.5 99.7 E-MEXP-838-raw-cel-1160703990
23.0 99.6 GSM134516 Col-0_4day_dark_+lincomycin_rep2 GSE5759 red illumination w/o lincomycin
22.3 99.6 GSM134517 Col-0_4day_red illumination_-lincomycin_rep1 GSE5759 red illumination w/o lincomycin
22.0 99.6 GSM134515 Col-0_4day_dark_+lincomycin_rep1 GSE5759 red illumination w/o lincomycin
19.3 99.6 GSM134519 Col-0_4day_red illumination_+lincomycin_rep1 GSE5759 red illumination w/o lincomycin
19.0 99.5 GSM253164 24h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
17.8 99.5 GSM134513 Col-0_4day_dark_-lincomycin_rep1 GSE5759 red illumination w/o lincomycin
17.4 99.5 E-MEXP-1299-raw-cel-1519903848
16.2 99.5 E-MEXP-838-raw-cel-1160703895
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 5e-2 38 At3g14750 820703 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFAV C.G. S.X.
0.03 2e-1 36 At1g26300 839171 BSD domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBFA C.G. S.X.
0.03 8e-1 34 At5g36700 833635 PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1) F:phosphoglycolate phosphatase activity;P:metabolic process;C:chloroplast stroma, chloroplast;BOMFAP C.G. S.X.
0.03 8e-1 34 At5g36790 833646 phosphoglycolate phosphatase, putative F:hydrolase activity, phosphatase activity, phosphoglycolate phosphatase activity, catalytic activity;P:metabolic process;C:apoplast, nucleus, chloroplast stroma, vacuole, cytoplasm;BOMFAP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Glycine max GmaAffx.75045.1.A1_at CD397699 - - 7e-1 At3g22183 unknown protein C.G. S.X.
0.05 6e+0 30 Hordeum vulgare Contig19331_at Contig19331 - - 3e+0 At1g67210 proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein C.G. S.X.
0.05 6e+0 32 Oryza sativa OsAffx.20915.1.S1_at - - - 0 C.G. S.X.
0.03 1e+0 34 Populus trichocarpa PtpAffx.110428.1.S1_at CA825924 - - 1e+0 At4g13870 WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE) C.G. S.X.
0.04 5e-2 38 Triticum aestivum TaAffx.132354.1.S1_at CA616304 - - 9e-1 At4g28290 unknown protein C.G. S.X.
0.04 9e-1 32 Vitis vinifera 1616158_at CD801717 hypothetical protein LOC100242302 - 4e+0 At4g28110 AtMYB41 (myb domain protein 41) C.G. S.X.
0.04 5e+0 30 Zea mays ZmAffx.496.1.A1_at AI691675 - - 8e-1 At5g48580 FKBP15-2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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