Gene omics information

Query gene ID At2g47780
Gene name rubber elongation factor (REF) protein-related
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3745.0At2g47780819390rubber elongation factor (REF) protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7788.0At1g43780840974scpl44 (serine carboxypeptidase-like 44)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOS.X.H.G.
0.7486.1At4g36880829841CP1 (CYSTEINE PROTEINASE1)F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAFS.X.H.G.
0.7184.2At1g02640837940BXL2 (BETA-XYLOSIDASE 2)encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.S.X.H.G.
0.7184.2At1g73120843643unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:unknown;PS.X.H.G.
0.7184.2At5g05290830411ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)S.X.H.G.
0.6176.7At4g39500830104CYP96A11member of CYP96AS.X.H.G.
0.4659.8At1g60090842304BGLU4 (BETA GLUCOSIDASE 4)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
107.799.9GSM134309Penfield_1-11_embryo-control_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
95.799.9GSM134308Penfield_1-10_embryo-control_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
90.999.9GSM153928ahg3-1 rep1GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
88.299.9GSM134310Penfield_1-12_embryo-control_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
85.599.9GSM153924ABA control rep1GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
68.599.9E-MEXP-1304-raw-cel-1530618033
67.899.9GSM153929ahg3-1 rep2GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
67.899.9GSM153926ahg1-1 rep1GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
59.699.8GSM153925ABA control rep2GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
50.199.8GSM134300Penfield_1-2_endosperm-control_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.033e-136At4g23880828487unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFC.G.S.X.
0.023e-136At4g25190828622unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;OMFBPVC.G.S.X.
0.013e-136At3g14067820621subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, plasma membrane, vacuole, plant-type cell wall;BPOFAMC.G.S.X.
0.031e+034At5g62850836406AtVEX1 (VEGETATIVE CELL EXPRESSED1)Encodes a protein that is expressed in vegetative cells of pollen.C.G.S.X.
0.021e+034At5g26230832692unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVC.G.S.X.
0.031e+034At5g52070835283agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.011e+034At5g58270835939STA1 (STARIK 1)Encodes a mitochondrial half-molecule ABC transporter, a member of ATM subfamily. Mutants are dwarfed, chlorotic plants with altered leaf morphology. ATM3 transcription is induced by Cd(II) or Pb(II). Involved in heavy metal resistance.C.G.S.X.
0.021e+034At5g53570835439RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular, chloroplast;OMFBPVAC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-138Glycine maxPsAffx.psMA013xI18f_atPsAffx.psMA013xI18f--4e-3At4g26470calcium ion bindingC.G.S.X.
0.042e-136Hordeum vulgareHF08F07r_atHF08F07r--2e-1At2g47780rubber elongation factor (REF) protein-relatedC.G.S.X.
0.037e-136Oryza sativaOs09g04463009637.m02401--2e-5At1g06475unknown proteinC.G.S.X.
0.045e-136Populus trichocarpaPtpAffx.50689.1.A1_atCV236424hypothetical protein-5e-1At4g16140proline-rich family proteinC.G.S.X.
0.034e-136Triticum aestivumTaAffx.104601.1.A1_atCA747194--3e-1At2g47780rubber elongation factor (REF) protein-relatedC.G.S.X.
0.093e-238Vitis vinifera1618632_atAF178990.1--1e-1At2g47780rubber elongation factor (REF) protein-relatedC.G.S.X.
0.022e+032Zea maysZm.9197.1.A1_atAF037061.1tonoplast intrinsic protein1-1e-8At3g26520TIP2 (TONOPLAST INTRINSIC PROTEIN 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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