CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g47730

Gene name ATGSTF8 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 8)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.18 11.4 At2g47730 819386 ATGSTF8 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 8) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.23 19.3 At3g10640 820233 VPS60.1 F:unknown;P:vesicle-mediated transport;C:unknown;MFPOA S.X. H.G.
0.20 14.4 At4g23470 828446 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:unknown;MOPFBVA S.X. H.G.
0.17 10.2 At4g25030 828606 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBF S.X. H.G.
0.06 1.4 At3g20510 821597 unknown protein F:unknown;P:biological_process unknown;C:nucleus, cytoplasm;MPBFO S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.0 99.4 GSM226540 L10SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
11.9 99.3 E-MEXP-1112-raw-cel-1590665793
11.2 99.2 E-MEXP-1443-raw-cel-1581869745
10.9 99.2 E-MEXP-1112-raw-cel-1590666053
10.6 99.2 E-MEXP-1443-raw-cel-1581869803
10.2 99.2 E-MEXP-807-raw-cel-1173273032
9.9 99.1 E-MEXP-1112-raw-cel-1590665845
9.8 99.1 E-MEXP-1443-raw-cel-1581869863
9.3 99.1 E-MEXP-1443-raw-cel-1581869921
9.0 99.1 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 6e-3 42 At5g48150 834867 PAT1 (phytochrome a signal transduction 1) Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway. C.G. S.X.
0.07 6e-3 42 At4g02520 827931 ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. C.G. S.X.
0.03 3e-2 40 At2g02930 814822 ATGSTF3 (GLUTATHIONE S-TRANSFERASE F3) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.01 4e-1 36 At5g61690 836291 ATATH15 member of ATH subfamily C.G. S.X.
0.02 4e-1 36 At3g63010 825476 GID1B (GA INSENSITIVE DWARF1B) Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4. C.G. S.X.
0.02 2e+0 34 At5g27930 832860 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFVB C.G. S.X.
0.01 2e+0 34 At4g10930 826692 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MOFBP C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Glycine max PsAffx.C158000044_at PsAffx.C158000044 - - 2e+0 At2g47730 ATGSTF8 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 8) C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig6479_s_at Contig6479 - - 4e+0 At4g11370 RHA1A C.G. S.X.
0.04 1e-2 42 Oryza sativa OsAffx.22394.1.S1_at - - - 0 C.G. S.X.
0.03 1e-1 38 Populus trichocarpa PtpAffx.144588.2.S1_s_at CX657349 hypothetical protein - 3e-1 At2g03913 - C.G. S.X.
0.03 4e-1 36 Triticum aestivum TaAffx.19523.1.S1_at BJ210974 - - 4e+0 At4g17760 damaged DNA binding / exodeoxyribonuclease III C.G. S.X.
0.10 5e-4 44 Vitis vinifera 1616933_at CB345010 hypothetical protein LOC100265903 - 1e-13 At1g02920 GSTF7 C.G. S.X.
0.03 2e-1 36 Zea mays ZmAffx.1126.1.A1_at AW313158 - - 3e+0 At2g28605 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009651 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
X GO:0042742 Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
X GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
X GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
S GO:0009407 The chemical reactions and pathways resulting in the breakdown of toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00480 Glutathione metabolism
00980 Metabolism of xenobiotics by cytochrome P450
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage