Gene omics information

Query gene ID At2g47710
Gene name universal stress protein (USP) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g47710819384universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:vacuole;BPOAMFS.X.H.G.
0.4152.4At5g20900832214JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFS.X.H.G.
0.3439.8At3g23490821930CYN (CYANASE)cyanaseS.X.H.G.
0.3338.1At3g60180825188uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putativeF:nucleobase, nucleoside, nucleotide kinase activity, uridylate kinase activity, nucleotide kinase activity, ATP binding, phosphotransferase activity, phosphate group as acceptor;P:pyrimidine ribonucleotide metabolic process, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration;C:nucleus, cytoplasm;BOMFPAS.X.H.G.
0.3338.1At4g22220828316ISU1Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein.S.X.H.G.
0.3235.7At5g19590832079unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POS.X.H.G.
0.3235.7At1g31940840084unknown proteinF:unknown;P:unknown;C:plasma membrane;PS.X.H.G.
0.3235.7At5g60360836158AALP (Arabidopsis aleurain-like protease)Encodes a senescence-associated thiol protease.S.X.H.G.
0.3133.8At4g14710827122acireductone dioxygenase [iron(II)-requiring]/ metal ion bindingF:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFOS.X.H.G.
0.3032.1At4g22260828321IM (IMMUTANS)Similar to mitochondrial alternative oxidase. im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
29.399.7E-MEXP-1443-raw-cel-1581869573
21.799.6GSM142654MC002_ATH1_A11.2-dubos-mxhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
21.199.6GSM142626MC002_ATH1_A2.1-dubos-wtcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
20.499.6GSM142651MC002_ATH1_A10.2-dubos-wthGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
19.599.6GSM142650MC002_ATH1_A10.1-dubos-wthGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
19.499.6GSM142655MC002_ATH1_A11.3-dubos-mxhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
19.399.6GSM142653MC002_ATH1_A11.1-dubos-mxhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
19.099.5GSM142627MC002_ATH1_A2.2-dubos-wtcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
18.799.5GSM142628MC002_ATH1_A2.3-dubos-wtcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
18.399.5E-MEXP-1443-raw-cel-1581869803
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.024e-342At1g03910839371-F:unknown;P:unknown;C:unknown;MOFPBVAC.G.S.X.
0.039e-134At3g51090824273-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBAVC.G.S.X.
0.039e-134At2g23940816926unknown proteinF:unknown;P:unknown;C:plasma membrane;MFOPC.G.S.X.
0.029e-134At2g42720818872F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFC.G.S.X.
0.029e-134At1g76110843943high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOFPC.G.S.X.
0.029e-134At1g65730842884YSL7 (YELLOW STRIPE LIKE 7)Arabidopsis thaliana metal-nicotianamine transporter YSL4C.G.S.X.
0.014e+032At5g48385834893-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBFC.G.S.X.
0.014e+032At4g21370827889S-locus protein kinase, putativeThe Col-0 pseudoSRKA allele contains a frameshift mutation that introduces a premature stop codon within the fourth of seven exons found in SRK genes. Its SCR sequences consist of several truncated pseudoSCR sequences, the longest of which is designated pseudoSCR1.C.G.S.X.
0.024e+032At3g62630825437-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.174e-756Glycine maxGmaAffx.92954.1.S1_atCF808679--3e-7At2g47710universal stress protein (USP) family proteinC.G.S.X.
0.145e-754Hordeum vulgareContig11090_atContig11090--2e-6At2g47710universal stress protein (USP) family proteinC.G.S.X.
0.111e-138Oryza sativaOs12g0552500BI809490-Universal stress protein (Usp) family protein3e-1At2g47710universal stress protein (USP) family proteinC.G.S.X.
0.212e-1893Populus trichocarpaPtpAffx.25938.1.S1_a_atCF234789hypothetical protein-2e-18At2g47710universal stress protein (USP) family proteinC.G.S.X.
0.184e-652Triticum aestivumTa.15583.1.S1_atCA485610--3e-6At2g47710universal stress protein (USP) family proteinC.G.S.X.
0.149e-1785Vitis vinifera1610505_atCD801882hypothetical protein LOC100260568-5e-16At2g47710universal stress protein (USP) family proteinC.G.S.X.
0.032e+032Zea maysZm.18403.1.A1_atBM072852hypothetical protein LOC100274307-5e-3At5g381204-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006950A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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