CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g47710

Gene name universal stress protein (USP) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g47710 819384 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:vacuole;BPOAMF S.X. H.G.
0.41 52.4 At5g20900 832214 JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
0.34 39.8 At3g23490 821930 CYN (CYANASE) cyanase S.X. H.G.
0.33 38.1 At3g60180 825188 uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative F:nucleobase, nucleoside, nucleotide kinase activity, uridylate kinase activity, nucleotide kinase activity, ATP binding, phosphotransferase activity, phosphate group as acceptor;P:pyrimidine ribonucleotide metabolic process, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration;C:nucleus, cytoplasm;BOMFPA S.X. H.G.
0.33 38.1 At4g22220 828316 ISU1 Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein. S.X. H.G.
0.32 35.7 At5g19590 832079 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO S.X. H.G.
0.32 35.7 At1g31940 840084 unknown protein F:unknown;P:unknown;C:plasma membrane;P S.X. H.G.
0.32 35.7 At5g60360 836158 AALP (Arabidopsis aleurain-like protease) Encodes a senescence-associated thiol protease. S.X. H.G.
0.31 33.8 At4g14710 827122 acireductone dioxygenase [iron(II)-requiring]/ metal ion binding F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFO S.X. H.G.
0.30 32.1 At4g22260 828321 IM (IMMUTANS) Similar to mitochondrial alternative oxidase. im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
29.3 99.7 E-MEXP-1443-raw-cel-1581869573
21.7 99.6 GSM142654 MC002_ATH1_A11.2-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
21.1 99.6 GSM142626 MC002_ATH1_A2.1-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
20.4 99.6 GSM142651 MC002_ATH1_A10.2-dubos-wth GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
19.5 99.6 GSM142650 MC002_ATH1_A10.1-dubos-wth GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
19.4 99.6 GSM142655 MC002_ATH1_A11.3-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
19.3 99.6 GSM142653 MC002_ATH1_A11.1-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
19.0 99.5 GSM142627 MC002_ATH1_A2.2-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
18.7 99.5 GSM142628 MC002_ATH1_A2.3-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
18.3 99.5 E-MEXP-1443-raw-cel-1581869803
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-3 42 At1g03910 839371 - F:unknown;P:unknown;C:unknown;MOFPBVA C.G. S.X.
0.03 9e-1 34 At3g51090 824273 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBAV C.G. S.X.
0.03 9e-1 34 At2g23940 816926 unknown protein F:unknown;P:unknown;C:plasma membrane;MFOP C.G. S.X.
0.02 9e-1 34 At2g42720 818872 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.02 9e-1 34 At1g76110 843943 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein F:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOFP C.G. S.X.
0.02 9e-1 34 At1g65730 842884 YSL7 (YELLOW STRIPE LIKE 7) Arabidopsis thaliana metal-nicotianamine transporter YSL4 C.G. S.X.
0.01 4e+0 32 At5g48385 834893 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBF C.G. S.X.
0.01 4e+0 32 At4g21370 827889 S-locus protein kinase, putative The Col-0 pseudoSRKA allele contains a frameshift mutation that introduces a premature stop codon within the fourth of seven exons found in SRK genes. Its SCR sequences consist of several truncated pseudoSCR sequences, the longest of which is designated pseudoSCR1. C.G. S.X.
0.02 4e+0 32 At3g62630 825437 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 4e-7 56 Glycine max GmaAffx.92954.1.S1_at CF808679 - - 3e-7 At2g47710 universal stress protein (USP) family protein C.G. S.X.
0.14 5e-7 54 Hordeum vulgare Contig11090_at Contig11090 - - 2e-6 At2g47710 universal stress protein (USP) family protein C.G. S.X.
0.11 1e-1 38 Oryza sativa Os12g0552500 BI809490 - Universal stress protein (Usp) family protein 3e-1 At2g47710 universal stress protein (USP) family protein C.G. S.X.
0.21 2e-18 93 Populus trichocarpa PtpAffx.25938.1.S1_a_at CF234789 hypothetical protein - 2e-18 At2g47710 universal stress protein (USP) family protein C.G. S.X.
0.18 4e-6 52 Triticum aestivum Ta.15583.1.S1_at CA485610 - - 3e-6 At2g47710 universal stress protein (USP) family protein C.G. S.X.
0.14 9e-17 85 Vitis vinifera 1610505_at CD801882 hypothetical protein LOC100260568 - 5e-16 At2g47710 universal stress protein (USP) family protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.18403.1.A1_at BM072852 hypothetical protein LOC100274307 - 5e-3 At5g38120 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006950 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage