Gene omics information

Query gene ID At2g47590
Gene name PHR2 (photolyase/blue-light receptor 2)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g47590819372PHR2 (photolyase/blue-light receptor 2)photolyase/blue light photoreceptor PHR2 (PHR2) mRNA,S.X.H.G.
0.7385.5At2g37660818343binding / catalytic/ coenzyme bindingF:coenzyme binding, binding, catalytic activity;P:defense response to bacterium;C:thylakoid, apoplast, chloroplast stroma, chloroplast;BOPFAMS.X.H.G.
0.6378.1At3g48730824034GSA2 (glutamate-1-semialdehyde 2,1-aminomutase 2)F:glutamate-1-semialdehyde 2,1-aminomutase activity, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:porphyrin biosynthetic process;C:chloroplast stroma, chloroplast, chloroplast envelope;BOFMAPVS.X.H.G.
0.6176.7At3g63490825524ribosomal protein L1 family proteinF:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:in 6 components;OBAFMPS.X.H.G.
0.5773.8At3g08740820021elongation factor P (EF-P) family proteinF:translation elongation factor activity;P:translational elongation;C:chloroplast, chloroplast stroma;BOPAS.X.H.G.
0.5773.8At5g63310836451NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)Maintains intracellular dNTP levels except ATP. Plays a role in response to oxidative stress and UV. Involved in phytochrome-mediated light signaling. Participates in auxin-regulated processes, partly through the modulation of auxin transport. H-bonding with His-197 inside the nucleotide-binding pocket is critical for NDPK2 functioning.S.X.H.G.
0.5368.6At4g24750828577-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOAS.X.H.G.
0.4659.8At1g02150839577pentatricopeptide (PPR) repeat-containing proteinF:binding;P:unknown;C:chloroplast;POFMBS.X.H.G.
0.4558.3At1g32990840194PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11S.X.H.G.
0.4355.3At2g25840817126OVA4 (ovule abortion 4)F:nucleotide binding, aminoacyl-tRNA ligase activity, tryptophan-tRNA ligase activity, ATP binding;P:N-terminal protein myristoylation, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBMFAPS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
9.599.1GSM131471ATGE_7_A2GSE5629AtGenExpress: Developmental series (seedlings and whole plants)
9.599.1GSM131472ATGE_7_B2GSE5629AtGenExpress: Developmental series (seedlings and whole plants)
9.599.1GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibition
9.399.1GSM133268RIKEN-GODA5B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
9.199.1GSM133260RIKEN-GODA1B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
8.999.0GSM131473ATGE_7_C2GSE5629AtGenExpress: Developmental series (seedlings and whole plants)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-242At5g67210836856unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBC.G.S.X.
0.012e-138At3g19380821472PUB25 (PLANT U-BOX 25)F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMFBVC.G.S.X.
0.017e-136At5g25220832593KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordiaC.G.S.X.
0.017e-136At3g05970819767LACS6 (long-chain acyl-CoA synthetase 6)encode peroxisomal long-chain acyl-CoA synthetase (LACS) isozymesC.G.S.X.
0.017e-136At3g46960823849ATP binding / ATP-dependent helicase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid bindingF:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:biological_process unknown;C:vacuole;OBMFAPVC.G.S.X.
0.013e+034At5g01380831895transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;MOFPBVAC.G.S.X.
0.013e+034At4g18760827610AtRLP51 (Receptor Like Protein 51)F:protein binding;P:signal transduction;C:plasma membrane;PMOBFAVC.G.S.X.
0.013e+034At4g14200827060unknown proteinF:unknown;P:biological_process unknown;C:unknown;MBOFPAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.187e-2099Glycine maxGma.2511.2.S1_atBI469205--2e-14At2g47590PHR2 (photolyase/blue-light receptor 2)C.G.S.X.
0.042e-859Hordeum vulgareContig5571_atContig5571--6e-8At2g47590PHR2 (photolyase/blue-light receptor 2)C.G.S.X.
0.036e-654Oryza sativaOs03g0343400AK105611.1-Photolyase/blue-light receptor (Photolyase/bluelight photoreceptor PHR2)4e-6At2g47590PHR2 (photolyase/blue-light receptor 2)C.G.S.X.
0.293e-1687Populus trichocarpaPtpAffx.491.3.S1_atCX177081--3e-16At2g47590PHR2 (photolyase/blue-light receptor 2)C.G.S.X.
0.065e-1169Triticum aestivumTa.6901.2.A1_atCD491465--2e-11At2g47590PHR2 (photolyase/blue-light receptor 2)C.G.S.X.
0.096e-1167Vitis vinifera1607575_atCF211135hypothetical protein LOC100253809-1e-10At2g47590PHR2 (photolyase/blue-light receptor 2)C.G.S.X.
0.048e-1167Zea maysZm.13617.1.A1_atCF028226hypothetical protein LOC100192113-2e-10At2g47590PHR2 (photolyase/blue-light receptor 2)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006281The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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