CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g47590

Gene name PHR2 (photolyase/blue-light receptor 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g47590 819372 PHR2 (photolyase/blue-light receptor 2) photolyase/blue light photoreceptor PHR2 (PHR2) mRNA, S.X. H.G.
0.73 85.5 At2g37660 818343 binding / catalytic/ coenzyme binding F:coenzyme binding, binding, catalytic activity;P:defense response to bacterium;C:thylakoid, apoplast, chloroplast stroma, chloroplast;BOPFAM S.X. H.G.
0.63 78.1 At3g48730 824034 GSA2 (glutamate-1-semialdehyde 2,1-aminomutase 2) F:glutamate-1-semialdehyde 2,1-aminomutase activity, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:porphyrin biosynthetic process;C:chloroplast stroma, chloroplast, chloroplast envelope;BOFMAPV S.X. H.G.
0.61 76.7 At3g63490 825524 ribosomal protein L1 family protein F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:in 6 components;OBAFMP S.X. H.G.
0.57 73.8 At3g08740 820021 elongation factor P (EF-P) family protein F:translation elongation factor activity;P:translational elongation;C:chloroplast, chloroplast stroma;BOPA S.X. H.G.
0.57 73.8 At5g63310 836451 NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) Maintains intracellular dNTP levels except ATP. Plays a role in response to oxidative stress and UV. Involved in phytochrome-mediated light signaling. Participates in auxin-regulated processes, partly through the modulation of auxin transport. H-bonding with His-197 inside the nucleotide-binding pocket is critical for NDPK2 functioning. S.X. H.G.
0.53 68.6 At4g24750 828577 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOA S.X. H.G.
0.46 59.8 At1g02150 839577 pentatricopeptide (PPR) repeat-containing protein F:binding;P:unknown;C:chloroplast;POFMB S.X. H.G.
0.45 58.3 At1g32990 840194 PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11 S.X. H.G.
0.43 55.3 At2g25840 817126 OVA4 (ovule abortion 4) F:nucleotide binding, aminoacyl-tRNA ligase activity, tryptophan-tRNA ligase activity, ATP binding;P:N-terminal protein myristoylation, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBMFAP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.6 99.1 E-TABM-18-raw-cel-489543413
9.5 99.1 GSM131471 ATGE_7_A2 GSE5629 AtGenExpress: Developmental series (seedlings and whole plants)
9.5 99.1 GSM131472 ATGE_7_B2 GSE5629 AtGenExpress: Developmental series (seedlings and whole plants)
9.5 99.1 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
9.4 99.1 E-TABM-18-raw-cel-489543085
9.3 99.1 GSM133268 RIKEN-GODA5B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
9.1 99.1 GSM133260 RIKEN-GODA1B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
8.9 99.0 GSM131473 ATGE_7_C2 GSE5629 AtGenExpress: Developmental series (seedlings and whole plants)
8.8 99.0 E-MEXP-1799-raw-cel-1665601126
8.4 99.0 E-TABM-18-raw-cel-489543219
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-2 42 At5g67210 836856 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB C.G. S.X.
0.01 2e-1 38 At3g19380 821472 PUB25 (PLANT U-BOX 25) F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMFBV C.G. S.X.
0.01 7e-1 36 At5g25220 832593 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia C.G. S.X.
0.01 7e-1 36 At3g05970 819767 LACS6 (long-chain acyl-CoA synthetase 6) encode peroxisomal long-chain acyl-CoA synthetase (LACS) isozymes C.G. S.X.
0.01 7e-1 36 At3g46960 823849 ATP binding / ATP-dependent helicase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:biological_process unknown;C:vacuole;OBMFAPV C.G. S.X.
0.01 3e+0 34 At5g01380 831895 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;MOFPBVA C.G. S.X.
0.01 3e+0 34 At4g18760 827610 AtRLP51 (Receptor Like Protein 51) F:protein binding;P:signal transduction;C:plasma membrane;PMOBFAV C.G. S.X.
0.01 3e+0 34 At4g14200 827060 unknown protein F:unknown;P:biological_process unknown;C:unknown;MBOFPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 7e-20 99 Glycine max Gma.2511.2.S1_at BI469205 - - 2e-14 At2g47590 PHR2 (photolyase/blue-light receptor 2) C.G. S.X.
0.04 2e-8 59 Hordeum vulgare Contig5571_at Contig5571 - - 6e-8 At2g47590 PHR2 (photolyase/blue-light receptor 2) C.G. S.X.
0.03 6e-6 54 Oryza sativa Os03g0343400 AK105611.1 - Photolyase/blue-light receptor (Photolyase/bluelight photoreceptor PHR2) 4e-6 At2g47590 PHR2 (photolyase/blue-light receptor 2) C.G. S.X.
0.29 3e-16 87 Populus trichocarpa PtpAffx.491.3.S1_at CX177081 - - 3e-16 At2g47590 PHR2 (photolyase/blue-light receptor 2) C.G. S.X.
0.06 5e-11 69 Triticum aestivum Ta.6901.2.A1_at CD491465 - - 2e-11 At2g47590 PHR2 (photolyase/blue-light receptor 2) C.G. S.X.
0.09 6e-11 67 Vitis vinifera 1607575_at CF211135 hypothetical protein LOC100253809 - 1e-10 At2g47590 PHR2 (photolyase/blue-light receptor 2) C.G. S.X.
0.04 8e-11 67 Zea mays Zm.13617.1.A1_at CF028226 hypothetical protein LOC100192113 - 2e-10 At2g47590 PHR2 (photolyase/blue-light receptor 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006281 The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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