CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g47540

Gene name pollen Ole e 1 allergen and extensin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g47540 819367 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
1.00 100.0 At5g49270 834987 SHV2 (SHAVEN 2) Involved in successfully establishing tip growth in root hairs. S.X. H.G.
0.91 95.6 At4g09990 826590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB S.X. H.G.
0.80 89.8 At3g24670 822063 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO S.X. H.G.
0.75 86.9 At2g34910 818056 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.63 78.1 At1g01750 839281 ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB S.X. H.G.
0.61 76.7 At1g27740 839667 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
552.2 100.0 GSM226537 L7SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
210.1 100.0 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
206.4 100.0 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
194.8 100.0 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
175.2 100.0 GSM184844 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
171.2 100.0 GSM133983 Birnbaum_1-13_StageIII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
145.7 99.9 GSM184843 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
139.0 99.9 GSM184835 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 5 GSE7639 Expression analysis of root developmental zones after treatment with salt
131.3 99.9 GSM266670 Arabidopsis, root cells, cortex, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
120.5 99.9 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-1 36 At1g76690 844002 OPR2 Encodes one of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. C.G. S.X.
0.01 1e+0 34 At5g45720 834611 ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, DNA binding, DNA-directed DNA polymerase activity, nucleotide binding, ATP binding;P:DNA replication;C:DNA polymerase III complex;OBMFAPV C.G. S.X.
0.00 1e+0 34 At3g02260 820398 BIG (BIG) Calossin-like protein required for polar auxin transport C.G. S.X.
0.01 1e+0 34 At3g15380 820777 choline transporter-related F:unknown;P:biological_process unknown;C:plasma membrane;MOFP C.G. S.X.
0.03 1e+0 34 At1g71480 843489 nuclear transport factor 2 (NTF2) family protein F:protein transporter activity;P:transport, protein import into nucleus;C:chloroplast thylakoid membrane, nucleus, intracellular, chloroplast;PBO C.G. S.X.
0.02 4e+0 32 At5g08640 830765 FLS (FLAVONOL SYNTHASE) Encodes a flavonol synthase that catalyzes formation of flavonols from dihydroflavonols. C.G. S.X.
0.01 4e+0 32 At5g41550 834157 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
0.03 4e+0 32 At5g66170 836749 - F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Glycine max PsAffx.C37000036_at PsAffx.C37000036 - - 1e+0 At2g47540 pollen Ole e 1 allergen and extensin family protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HY03N03T_at HY03N03T - - 3e-1 At3g56580 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 2e+0 34 Oryza sativa Os.24501.1.A1_at - - - 0 C.G. S.X.
0.06 2e-2 40 Populus trichocarpa PtpAffx.202348.1.S1_at pmrna4714 hypothetical protein - 2e-2 At2g47540 pollen Ole e 1 allergen and extensin family protein C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.37806.1.A1_at BJ264535 - - 2e+0 At2g47540 pollen Ole e 1 allergen and extensin family protein C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1610939_at CF608429 hypothetical protein LOC100240812 - 5e-9 At3g05420 ACBP4 (ACYL-COA BINDING PROTEIN 4) C.G. S.X.
0.03 7e+0 30 Zea mays Zm.6810.3.A1_a_at CF627455 nudix type motif 22 - 1e+0 At2g16490 XH domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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