CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g47520

Gene name AP2 domain-containing transcription factor, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g47520 819365 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. S.X. H.G.
0.53 68.6 At3g28580 822488 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:response to abscisic acid stimulus;C:endoplasmic reticulum;OMBFPAV S.X. H.G.
0.46 59.8 At3g25250 822119 AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1) Arabidopsis protein kinase S.X. H.G.
0.43 55.3 At5g57510 835855 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.38 46.7 At2g32020 817762 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:response to abscisic acid stimulus, metabolic process;C:cellular_component unknown;BOFPAVM S.X. H.G.
0.32 35.7 At5g14730 831325 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
0.26 24.4 At2g41730 818772 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.14 6.8 At3g50930 824257 BCS1 (CYTOCHROME BC1 SYNTHESIS) F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:mitochondrion, plastid;BOMFPAV S.X. H.G.
0.09 2.8 At1g76650 843998 calcium-binding EF hand family protein F:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
458.1 100.0 GSM142593 DB001_ATH1_A3-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
376.2 100.0 GSM142594 DB001_ATH1_A4-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
328.8 100.0 GSM142592 DB001_ATH1_A2-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
284.7 100.0 GSM218587 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
239.3 100.0 GSM142596 DB001_ATH1_A6-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
138.2 99.9 E-MEXP-807-raw-cel-1173272948
129.4 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
119.1 99.9 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
109.8 99.9 E-MEXP-807-raw-cel-1173273252
103.0 99.9 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.08 7e-11 67 At5g50080 835072 DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. C.G. S.X.
0.08 4e-9 61 At3g14230 820643 RAP2.2 encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. C.G. S.X.
0.04 7e-5 48 At4g27950 828908 CRF4 (CYTOKININ RESPONSE FACTOR 4) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. C.G. S.X.
0.14 7e-5 48 At1g53910 841829 RAP2.12 encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.12). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. C.G. S.X.
0.06 3e-4 46 At1g43160 840915 RAP2.6 (related to AP2 6) encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family (RAP2.6). The protein contains one AP2 domain. There are 7 members in this subfamily. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 2e-24 113 Glycine max Gma.3066.2.S1_s_at CA782314 - - 1e-24 At2g47520 AP2 domain-containing transcription factor, putative C.G. S.X.
0.06 5e-7 54 Hordeum vulgare Contig2257_s_at Contig2257 - - 9e-16 At3g14230 RAP2.2 C.G. S.X.
0.07 1e-10 67 Oryza sativa Os09g0434500 AF364176.1 - Ethylene response factor 2 1e-9 At3g14230 RAP2.2 C.G. S.X.
0.14 2e-12 73 Populus trichocarpa Ptp.4688.1.S1_s_at CK093479 AP2/ERF domain-containing transcription factor - 1e-19 At3g14230 RAP2.2 C.G. S.X.
0.06 3e-1 36 Triticum aestivum Ta.21124.2.S1_x_at CA639996 Ethylene-responsive element binding protein 2 - 3e-1 At2g47520 AP2 domain-containing transcription factor, putative C.G. S.X.
0.18 5e-12 69 Vitis vinifera 1609683_at CF604955 hypothetical protein LOC100249982 - 2e-11 At2g47520 AP2 domain-containing transcription factor, putative C.G. S.X.
0.03 2e+0 32 Zea mays Zm.17981.1.A1_at CK827727 hypothetical protein LOC100277738 - 5e+0 At2g47520 AP2 domain-containing transcription factor, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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