CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g47260

Gene name WRKY23

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At2g47260 819339 WRKY23 member of WRKY Transcription Factor; Group I S.X. H.G.
1.00 100.0 At1g71380 843479 ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF S.X. H.G.
0.75 86.9 At2g01610 814690 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.73 85.5 At2g20800 816609 NDB4 (NAD(P)H dehydrogenase B4) F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAM S.X. H.G.
0.67 81.6 At3g27400 822361 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO S.X. H.G.
0.46 59.8 At1g22090 838814 emb2204 (embryo defective 2204) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
236.8 100.0 GSM134206 Murray_3-3_D5-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
151.7 99.9 GSM134208 Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
138.3 99.9 E-MEXP-1797-raw-cel-1669768084
125.0 99.9 E-ATMX-13-raw-cel-1556149759
124.3 99.9 E-ATMX-13-raw-cel-1556149807
120.7 99.9 E-MEXP-1797-raw-cel-1669767967
102.3 99.9 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
93.3 99.9 E-ATMX-13-raw-cel-1556149727
91.3 99.9 E-MEXP-1797-raw-cel-1669768057
91.0 99.9 E-MEXP-1797-raw-cel-1669768039
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.28 1e-29 131 At3g62340 825407 WRKY68 member of WRKY Transcription Factor; Group II-c C.G. S.X.
0.12 6e-22 105 At5g46350 834678 WRKY8 member of WRKY Transcription Factor; Group II-c C.G. S.X.
0.17 4e-17 89 At4g18170 827542 WRKY28 member of WRKY Transcription Factor; Group II-c C.G. S.X.
0.09 2e-15 83 At1g29860 839864 WRKY71 member of WRKY Transcription Factor; Group II-c C.G. S.X.
0.08 9e-15 81 At1g69310 843262 WRKY57 member of WRKY Transcription Factor; Group II-c C.G. S.X.
0.11 2e-13 77 At5g49520 835012 WRKY48 member of WRKY Transcription Factor; Group II-c C.G. S.X.
0.03 1e-10 67 At5g56270 835726 WRKY2 WRKY transcription factor 2 C.G. S.X.
0.05 3e-5 50 At5g41570 834159 WRKY24 member of WRKY Transcription Factor; Group II-c C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 2e-41 171 Glycine max Gma.8336.1.S1_at BQ473657 WRKY86 - 8e-42 At2g47260 WRKY23 C.G. S.X.
0.04 1e-3 44 Hordeum vulgare Contig15657_at Contig15657 - - 2e-9 At5g07100 WRKY26 C.G. S.X.
0.08 7e-11 69 Oryza sativa Os07g0111400 AY341858.1 - WRKY transcription factor 29 3e-15 At5g46350 WRKY8 C.G. S.X.
0.22 7e-44 178 Populus trichocarpa PtpAffx.12708.1.A1_at CV256109 hypothetical protein - 8e-44 At2g47260 WRKY23 C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.86947.1.S1_at BJ223693 - - 4e+0 At4g24960 ATHVA22D C.G. S.X.
0.17 2e-25 115 Vitis vinifera 1622333_at CD799818 hypothetical protein LOC100264006 - 6e-25 At2g47260 WRKY23 C.G. S.X.
0.03 6e-2 38 Zea mays Zm.8932.1.A1_at CA400910 hypothetical protein LOC100279793 - 4e-11 At4g26640 WRKY20 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
L GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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