CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g47200

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g47200 819333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.80 89.8 At5g37690 833748 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.78 88.6 At5g58860 836003 CYP86A1 (CYTOCHROME P450 86 A1) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue. S.X. H.G.
0.77 88.0 At2g23540 816886 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.74 86.1 At2g18370 816352 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. S.X. H.G.
0.72 84.8 At5g44550 834482 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.70 83.5 At3g18400 821369 anac058 (Arabidopsis NAC domain containing protein 58) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO S.X. H.G.
0.69 82.9 At2g35380 818105 peroxidase 20 (PER20) (P20) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.67 81.6 At1g49960 841419 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV S.X. H.G.
0.67 81.6 At4g20390 827787 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
214.8 100.0 GSM142669 SF002_ATH1_A7-Fille-ANGR4-12nodex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
143.6 99.9 GSM142675 SF002_ATH1_A6-Fille-WT+dex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
80.3 99.9 GSM131699 ATGE_81_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
80.1 99.9 GSM142670 SF002_ATH1_A8-Fille-ANGR4-12+dex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
75.9 99.9 GSM142674 SF002_ATH1_A5-Fille-WTnodex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
69.9 99.9 GSM291101 root - 21% oxygen - 2h - E GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
68.4 99.9 GSM131378 AtGen_6-5522_Genotoxicstress-Roots-12.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
56.0 99.8 GSM157339 Coates_1-11_Col-3_Rep3_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
53.7 99.8 GSM131377 AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
53.7 99.8 GSM142671 SF001_ATH1_A1-Fille-WT-nodex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 5e-1 34 At4g30150 829138 - F:unknown;P:unknown;C:unknown;POMVB C.G. S.X.
0.02 2e+0 32 At5g63180 836439 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;BPFO C.G. S.X.
0.01 2e+0 32 At4g35240 829677 unknown protein F:unknown;P:N-terminal protein myristoylation;C:plasma membrane;PMFOBV C.G. S.X.
0.03 2e+0 32 At3g20700 821617 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 2e+0 32 At3g62340 825407 WRKY68 member of WRKY Transcription Factor; Group II-c C.G. S.X.
0.01 2e+0 32 At1g02530 839282 PGP12 (P-GLYCOPROTEIN 12) F:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:integral to membrane;BOMAFPV C.G. S.X.
0.01 8e+0 30 At5g05130 830395 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein F:in 7 functions;P:unknown;C:unknown;MOBFPVA C.G. S.X.
0.01 8e+0 30 At5g45530 834589 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 7e-1 34 Glycine max Gma.13935.1.A1_s_at CD410747 - - 7e-1 At2g47200 unknown protein C.G. S.X.
0.05 1e+0 32 Hordeum vulgare Contig18924_at Contig18924 - - 3e-3 At2g22475 GEM (GL2-EXPRESSION MODULATOR) C.G. S.X.
0.04 4e+0 32 Oryza sativa Os08g0271900 9636.m01716 - - 9e-1 At4g21780 unknown protein C.G. S.X.
0.03 3e+0 32 Populus trichocarpa PtpAffx.56073.1.A1_at CV280502 hypothetical protein - 3e-14 At2g17530 protein kinase family protein C.G. S.X.
0.04 2e+0 32 Triticum aestivum Ta.19870.3.S1_x_at CA613546 - - 4e+0 At4g08390 SAPX (STROMAL ASCORBATE PEROXIDASE) C.G. S.X.
0.04 2e+0 30 Vitis vinifera 1609886_at CB345227 - - 1e-12 At5g09830 BolA-like family protein C.G. S.X.
0.05 1e+1 28 Zea mays ZmAffx.1142.1.S1_at AW399873 - - 2e+0 At5g47550 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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