Gene omics information

Query gene ID At2g47120
Gene name short-chain dehydrogenase/reductase (SDR) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8190.4At2g47120819325short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.8894.0At5g64190836540unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8491.9At3g62730825448unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBS.X.H.G.
0.8290.9At1g03890839379cupin family proteinF:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;PBMOS.X.H.G.
0.8190.4At3g60730825244pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMS.X.H.G.
0.8089.8At1g62290842526aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis, lipid metabolic process;C:vacuole;MFOPBS.X.H.G.
0.7989.1At3g63040825479unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.7888.6At4g271508288232S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;POS.X.H.G.
0.7888.6At4g36700829823cupin family proteinF:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;MOFBPVAS.X.H.G.
0.7788.0At4g271708288252S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;POS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
441.2100.0GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
436.1100.0GSM131697ATGE_81_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
397.2100.0GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
205.1100.0GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
201.2100.0GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
195.1100.0GSM10451WT Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
183.9100.0GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
148.799.9GSM131700ATGE_82_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
139.899.9GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
132.099.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.823e-122438At2g47130819326short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVC.G.S.X.
0.641e-68260At3g29260822582short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVC.G.S.X.
0.628e-64244At3g29250822580copper ion binding / oxidoreductaseF:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAVC.G.S.X.
0.472e-37157At2g47150819328short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOFMPAC.G.S.X.
0.298e-24111At2g47140819327short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.035e-136Glycine maxGma.12726.1.A1_atCD395045--2e-1At2g47120short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.037e-134Hordeum vulgareContig1785_atContig1785--2e+0At5g41440zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.031e+132Oryza sativaOs11g02687509639.m01524--2e+0At1g30460CPSF30C.G.S.X.
0.072e+034Populus trichocarpaPtpAffx.1788.2.A1_atCV264806--7e-3Atcg00360-C.G.S.X.
0.036e+032Triticum aestivumTa.5785.1.S1_atBJ289636--3e+0At5g02210-C.G.S.X.
0.037e+030Vitis vinifera1618264_x_atCF200671.1--5e-14At5g03240UBQ3 (POLYUBIQUITIN 3)C.G.S.X.
0.023e+032Zea maysZm.13677.1.A1_atCO51934812-oxo-phytodienoic acid reductase-6e+0At1g06400ARA-2C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00120Link to KaPPA-View 4Phosphoenolpyruvate and Pyruvate metabolism



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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