CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g47020

Gene name peptide chain release factor, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g47020 819316 peptide chain release factor, putative F:translation release factor activity, codon specific, translation release factor activity;P:translational termination;C:mitochondrion, cytoplasm;OBMFPV S.X. H.G.
0.37 45.0 At3g56640 824831 exocyst complex subunit Sec15-like family protein F:unknown;P:pollen germination, pollen tube growth;C:exocyst;MFPOA S.X. H.G.
0.28 30.3 At1g31814 840070 FRL2 (FRIGIDA LIKE 2) family member of FRI-related genes that is required for the winter-annual habit. Genbank accession BK004885 S.X. H.G.
0.27 26.2 At5g15270 831379 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOB S.X. H.G.
0.26 24.4 At5g65180 836642 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPAV S.X. H.G.
0.26 24.4 At5g05660 830450 ATNFXL2 Encodes a homolog of the mammalian zinc finger transcription factor NF-X1. S.X. H.G.
0.24 20.7 At4g14920 827150 DNA binding / protein binding / zinc ion binding F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO S.X. H.G.
0.23 19.3 At4g24500 828552 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBV S.X. H.G.
0.20 14.4 At1g79540 844292 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA S.X. H.G.
0.20 14.4 At3g23900 821973 RNA recognition motif (RRM)-containing protein F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
119.3 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
118.3 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
100.3 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
99.8 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
94.1 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
91.8 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
91.0 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
86.9 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
86.2 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
84.1 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-3 44 At4g07990 826304 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:unknown;BOMPFA C.G. S.X.
0.02 6e-1 36 At5g16030 831460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA C.G. S.X.
0.01 6e-1 36 At3g23670 821947 KINESIN-12B Microtubule motor kinesin PAKRP1L/Kinesin-12B. Together with PAKRP1/Kinesin-12A, serve as linkers of the plus ends of antiparallel microtubules in the phragmoplast. C.G. S.X.
0.01 6e-1 36 At3g53350 824503 myosin heavy chain-related F:unknown;P:biological_process unknown;C:nucleus;MOBFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Glycine max GmaAffx.70843.1.S1_at BM188078 - - 2e-5 At1g25550 myb family transcription factor C.G. S.X.
0.03 1e+0 34 Hordeum vulgare HA16C22r_at HA16C22r - - 7e-1 At2g47020 peptide chain release factor, putative C.G. S.X.
0.30 7e-27 123 Oryza sativa Os05g0277300 AK058300.1 - Peptide chain release factor 1 4e-27 At2g47020 peptide chain release factor, putative C.G. S.X.
0.54 1e-79 297 Populus trichocarpa PtpAffx.211684.1.S1_at pmrna22901 hypothetical protein - 2e-62 At2g47020 peptide chain release factor, putative C.G. S.X.
0.02 1e+1 32 Triticum aestivum TaAffx.58673.1.S1_at CA617417 - - 2e-29 At3g02230 RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1) C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1619245_at CD719586 hypothetical protein LOC100262100 - 6e-6 At1g27510 - C.G. S.X.
0.12 7e-8 57 Zea mays Zm.5142.1.A1_at AI603769 hypothetical protein LOC100274396 - 1e-7 At2g47020 peptide chain release factor, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006415 The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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