Gene omics information

Query gene ID At2g47000
Gene name ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2726.2At2g47000819314ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4)Multidrug resistance P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal redirection of auxin from the root tip. Exhibits apolar plasma membrane localization in the root cap and polar localization in tissues above.S.X.H.G.
0.8994.6At1g02520839353PGP11 (P-GLYCOPROTEIN 11)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPVS.X.H.G.
0.7385.5At1g71530843493protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:chloroplast;MPOFBVAS.X.H.G.
0.4050.8At2g32020817762GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:response to abscisic acid stimulus, metabolic process;C:cellular_component unknown;BOFPAVMS.X.H.G.
0.4050.8At3g25655822153IDL1 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 1)Similar to Inflorescence Deficient in Abscission (IDA). Involved in floral organ abscission.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
267.4100.0E-MEXP-807-raw-cel-1173272948
210.1100.0GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
197.2100.0GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
184.8100.0GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
155.199.9GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
73.299.9GSM131325AtGen_6-3521_Saltstress-Roots-12.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
69.699.9GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
63.899.8GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
39.999.8GSM134404St.Clair_1-101_324_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5755Expression Level Polymorphism Project (ELP) - Tsu-1
38.999.8GSM128676Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.680753At3g62150825388PGP21 (P-GLYCOPROTEIN 21)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPVC.G.S.X.
0.361e-47192At1g02520839353PGP11 (P-GLYCOPROTEIN 11)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPVC.G.S.X.
0.352e-43178At1g02530839282PGP12 (P-GLYCOPROTEIN 12)F:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:integral to membrane;BOMAFPVC.G.S.X.
0.328e-43176At4g01820826951PGP3 (P-GLYCOPROTEIN 3)member of MDR subfamilyC.G.S.X.
0.272e-34149At4g01830826974PGP5 (P-GLYCOPROTEIN 5)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVC.G.S.X.
0.199e-963At4g18050827530PGP9 (P-GLYCOPROTEIN 9)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVC.G.S.X.
0.153e-861At5g46540834697PGP7 (P-GLYCOPROTEIN 7)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVC.G.S.X.
0.011e-759At1g27940839687PGP13 (P-GLYCOPROTEIN 13)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVC.G.S.X.
0.011e-759At1g28010839694PGP14 (P-GLYCOPROTEIN 14)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.075e-861Glycine maxGmaAffx.88118.1.S1_atBE474488--1e-10At1g02520PGP11 (P-GLYCOPROTEIN 11)C.G.S.X.
0.024e-344Hordeum vulgareContig7979_atContig7979--3e-2At4g01820PGP3 (P-GLYCOPROTEIN 3)C.G.S.X.
0.105e-1585Oryza sativaOs01g0290700AK058263.1-MDR-like p-glycoprotein2e-31At3g62150PGP21 (P-GLYCOPROTEIN 21)C.G.S.X.
0.315e-51204Populus trichocarpaPtpAffx.202415.1.S1_atpmrna4851multidrug/pheromone exporter, MDR family, ABC transporter family-4e-51At2g47000ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4)C.G.S.X.
0.028e-344Triticum aestivumTa.847.1.S1_x_atBQ168917--5e-8At4g01830PGP5 (P-GLYCOPROTEIN 5)C.G.S.X.
0.091e-138Vitis vinifera1610363_atCB979583hypothetical protein LOC100267452-9e-32At3g62150PGP21 (P-GLYCOPROTEIN 21)C.G.S.X.
0.028e-136Zea maysZm.4341.1.S1_atCK985951hypothetical protein LOC100194270-7e-7At4g01830PGP5 (P-GLYCOPROTEIN 5)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010540The unidirectional movement of auxin from the apex to base of an organ, including the shoot, leaf, primary root, or lateral root.
XGO:0010315The process involved in the transport of auxin out of the cell.
XGO:0048767The process by which the root hair grows longer.
XGO:0009630The orientation of plant parts under the stimulation of gravity.
XGO:0009733A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
XGO:0009735A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus.
SGO:0009926The unidirectional movement of auxin in the stem from tip to base along the vector of gravity or basipetally.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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