Gene omics information

Query gene ID At2g46780
Gene name RNA binding / nucleic acid binding / nucleotide binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g46780819291RNA binding / nucleic acid binding / nucleotide bindingF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAS.X.H.G.
0.4457.2At2g05810815132armadillo/beta-catenin repeat family proteinF:binding;P:unknown;C:cellular_component unknown;PMFOS.X.H.G.
0.4355.3At2g31340817692emb1381 (embryo defective 1381)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PS.X.H.G.
0.4152.4At5g65830836712leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;POMBFAS.X.H.G.
0.4152.4At1g13170837875ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D)F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOPS.X.H.G.
0.3846.7At3g27325822352hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds;P:intracellular protein transport, GPI anchor metabolic process;C:endoplasmic reticulum, plasma membrane;FMPBOS.X.H.G.
0.3541.6At3g63290825504unknown proteinF:molecular_function unknown;P:pollen development;C:cellular_component unknown;FPOBS.X.H.G.
0.3541.6At2g17970816307oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PMOBS.X.H.G.
0.3541.6At4g16320---S.X.H.G.
0.3541.6At1g23980839010zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
157.599.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
107.999.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
97.199.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
95.099.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
84.899.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
84.499.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
81.599.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
78.299.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
72.499.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
69.099.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.084e-1789At1g76460843979RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAC.G.S.X.
0.162e-963At1g33470840240RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBC.G.S.X.
0.071e-757At1g20880838681RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBC.G.S.X.
0.032e-344At1g22910838898RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAC.G.S.X.
0.122e-344At1g22330838839RNA binding / nucleic acid binding / nucleotide bindingF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAC.G.S.X.
0.023e-240At3g10400820203RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.177e-1375Glycine maxGmaAffx.7627.1.S1_atAW781901--5e-13At2g46780RNA binding / nucleic acid binding / nucleotide bindingC.G.S.X.
0.032e-136Hordeum vulgareContig3735_atContig3735--2e-1At2g02100LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69)C.G.S.X.
0.074e-654Oryza sativaOs01g0876800BI804947-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein3e+0At5g28770BZO2H3C.G.S.X.
0.313e-21103Populus trichocarpaPtpAffx.211648.1.S1_atpmrna22822hypothetical protein-6e-22At2g46780RNA binding / nucleic acid binding / nucleotide bindingC.G.S.X.
0.035e-136Triticum aestivumTaAffx.5394.1.S1_atCA712351--3e-1At2g46780RNA binding / nucleic acid binding / nucleotide bindingC.G.S.X.
0.044e-548Vitis vinifera1612753_atCF205714.1hypothetical protein LOC100260428-3e-1At1g09932phosphoglycerate/bisphosphoglycerate mutase-relatedC.G.S.X.
0.068e-754Zea maysZm.1141.2.A1_atBM351386hypothetical protein LOC100276557-9e-14At1g22910RNA recognition motif (RRM)-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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